Variant report

Variant	rs7925027
Chromosome Location	chr11:93869974-93869975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93867029..93870976-chr11:93873101..93877852,6	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11826118	1.00[MEX][hapmap]
rs11828881	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919972	1.00[MEX][hapmap]
rs56723829	0.87[ASN][1000 genomes]
rs58049964	0.97[ASN][1000 genomes]
rs58216749	0.93[ASN][1000 genomes]
rs58863592	0.97[ASN][1000 genomes]
rs58965645	0.87[ASN][1000 genomes]
rs59768849	0.97[ASN][1000 genomes]
rs61671722	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs67060752	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7102046	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7120920	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs72968735	0.82[ASN][1000 genomes]
rs72968739	0.90[ASN][1000 genomes]
rs72968751	0.90[ASN][1000 genomes]
rs72968770	0.87[ASN][1000 genomes]
rs72968772	0.90[ASN][1000 genomes]
rs72968780	0.90[ASN][1000 genomes]
rs72968785	0.87[ASN][1000 genomes]
rs72968788	0.96[ASN][1000 genomes]
rs72968791	0.92[ASN][1000 genomes]
rs72970708	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72970709	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72970719	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs72970727	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73512252	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv508651	chr11:93834300-93880470	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv898185	chr11:93851048-93927529	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	esv989619	chr11:93861937-93872912	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	nsv469980	chr11:93864321-93962121	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv468795	chr11:93864321-93964917	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv555966	chr11:93864321-93964917	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
10	nsv517664	chr11:93866147-93913036	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93863600-93871400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr11:93863800-93870200	Enhancers	Right Ventricle	heart
3	chr11:93864000-93871200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:93864000-93879800	Weak transcription	Primary T cells from cord blood	blood
5	chr11:93864400-93870000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:93864400-93870200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr11:93864400-93872800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:93864800-93871200	Weak transcription	Thymus	Thymus
9	chr11:93864800-93873200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:93865400-93881600	Weak transcription	Fetal Intestine Small	intestine
11	chr11:93865600-93872000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:93865600-93874200	Weak transcription	Brain Anterior Caudate	brain
13	chr11:93865600-93875000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:93865600-93875000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:93865600-93875200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:93865800-93870800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr11:93865800-93871200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:93865800-93874400	Weak transcription	HepG2	liver
19	chr11:93866200-93870200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr11:93866400-93870200	Enhancers	Primary B cells from peripheral blood	blood
21	chr11:93866400-93870800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr11:93866600-93872000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:93867000-93879800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr11:93867200-93872800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr11:93867200-93875200	Weak transcription	Esophagus	oesophagus
26	chr11:93867200-93882000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr11:93867600-93871000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:93867600-93875000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr11:93867600-93880000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr11:93867800-93871400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr11:93868200-93875400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr11:93868200-93886600	Weak transcription	Fetal Brain Female	brain
33	chr11:93868400-93870000	Weak transcription	Lung	lung
34	chr11:93868400-93870000	Weak transcription	Psoas Muscle	Psoas
35	chr11:93868400-93870000	Weak transcription	Spleen	Spleen
36	chr11:93868400-93870400	Flanking Active TSS	Hela-S3	cervix
37	chr11:93868400-93870600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr11:93868400-93872800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:93868400-93875000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr11:93868400-93875000	Weak transcription	Brain Germinal Matrix	brain
41	chr11:93868400-93875000	Weak transcription	Gastric	stomach
42	chr11:93868400-93875200	Weak transcription	Brain Cingulate Gyrus	brain
43	chr11:93868400-93880600	Weak transcription	Fetal Thymus	thymus
44	chr11:93868600-93870000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:93868600-93872600	Weak transcription	Right Atrium	heart
46	chr11:93868600-93874800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr11:93868600-93875000	Weak transcription	Pancreas	Pancrea
48	chr11:93868600-93879400	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr11:93868800-93870200	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr11:93868800-93870200	Enhancers	HMEC	breast

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