Variant report

Variant	rs7120920
Chromosome Location	chr11:93878708-93878709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:93875120..93879114-chr11:93880737..93884211,6	K562	blood:
2	chr11:93877656..93879395-chr11:93882351..93886074,3	MCF-7	breast:
3	chr11:93874386..93876238-chr11:93877234..93879680,2	MCF-7	breast:
4	chr11:93877718..93879953-chr11:94225579..94227905,2	K562	blood:

Variant related genes	Relation type
ENSG00000020922	Chromatin interaction
ENSG00000168876	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11822030	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11825559	1.00[EUR][1000 genomes]
rs11826118	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11826223	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11828881	0.97[ASN][1000 genomes]
rs12276417	1.00[EUR][1000 genomes]
rs1518556	1.00[EUR][1000 genomes]
rs1518557	1.00[EUR][1000 genomes]
rs1518558	1.00[EUR][1000 genomes]
rs1518559	1.00[EUR][1000 genomes]
rs16919776	1.00[EUR][1000 genomes]
rs16919850	1.00[EUR][1000 genomes]
rs16919852	1.00[EUR][1000 genomes]
rs16919866	1.00[EUR][1000 genomes]
rs16919972	1.00[EUR][1000 genomes]
rs2460043	1.00[EUR][1000 genomes]
rs2511377	1.00[EUR][1000 genomes]
rs56723829	0.85[ASN][1000 genomes]
rs58049964	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58216749	0.90[ASN][1000 genomes]
rs58814864	1.00[EUR][1000 genomes]
rs58863592	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58965645	0.85[ASN][1000 genomes]
rs59768849	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60464761	1.00[EUR][1000 genomes]
rs60818592	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61671722	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs67060752	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7102046	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72968739	0.87[ASN][1000 genomes]
rs72968751	0.87[ASN][1000 genomes]
rs72968770	0.85[ASN][1000 genomes]
rs72968772	0.87[ASN][1000 genomes]
rs72968780	0.87[ASN][1000 genomes]
rs72968785	0.85[ASN][1000 genomes]
rs72968788	0.93[ASN][1000 genomes]
rs72968791	0.89[ASN][1000 genomes]
rs72970708	0.97[ASN][1000 genomes]
rs72970709	0.97[ASN][1000 genomes]
rs72970719	1.00[ASN][1000 genomes]
rs72970727	1.00[ASN][1000 genomes]
rs73512239	1.00[EUR][1000 genomes]
rs73512242	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73512245	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73512246	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73512252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73512253	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73512254	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73512255	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73512256	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73512257	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73512258	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73512260	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7925027	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs983327	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv508651	chr11:93834300-93880470	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv898185	chr11:93851048-93927529	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv469980	chr11:93864321-93962121	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv468795	chr11:93864321-93964917	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv555966	chr11:93864321-93964917	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv517664	chr11:93866147-93913036	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93864000-93879800	Weak transcription	Primary T cells from cord blood	blood
2	chr11:93865400-93881600	Weak transcription	Fetal Intestine Small	intestine
3	chr11:93867000-93879800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr11:93867200-93882000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:93867600-93880000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr11:93868200-93886600	Weak transcription	Fetal Brain Female	brain
7	chr11:93868400-93880600	Weak transcription	Fetal Thymus	thymus
8	chr11:93868600-93879400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:93868800-93881000	Weak transcription	Fetal Intestine Large	intestine
10	chr11:93868800-93883800	Weak transcription	Primary B cells from cord blood	blood
11	chr11:93870200-93879200	Weak transcription	Dnd41	blood
12	chr11:93870200-93879600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr11:93870600-93881000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:93870800-93879600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:93873800-93879400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr11:93873800-93882200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr11:93873800-93887200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:93874200-93879600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:93874400-93880200	Enhancers	HepG2	liver
20	chr11:93874600-93880800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:93875000-93879600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr11:93875000-93880000	Enhancers	A549	lung
23	chr11:93875000-93881000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:93875200-93879600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:93875400-93882600	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr11:93875600-93879200	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:93875600-93879600	Weak transcription	Primary B cells from peripheral blood	blood
28	chr11:93875600-93879600	Weak transcription	Ovary	ovary
29	chr11:93875600-93880000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:93875600-93882400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:93875600-93882400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr11:93875800-93878800	Weak transcription	Adipose Nuclei	Adipose
33	chr11:93875800-93879200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:93875800-93880400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:93875800-93882600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:93875800-93882800	Weak transcription	Aorta	Aorta
37	chr11:93875800-93883800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr11:93875800-93884400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:93876000-93879600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:93876000-93880400	Weak transcription	HSMM	muscle
41	chr11:93876000-93880600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr11:93876000-93880600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:93876000-93882000	Weak transcription	Fetal Muscle Leg	muscle
44	chr11:93876000-93882400	Weak transcription	Fetal Stomach	stomach
45	chr11:93876200-93879600	Weak transcription	Right Atrium	heart
46	chr11:93876200-93880800	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr11:93876200-93884400	Weak transcription	HSMMtube	muscle
48	chr11:93876200-93885200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr11:93876400-93879000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr11:93876400-93879200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links