Variant report

Variant	rs73512258
Chromosome Location	chr11:93885643-93885644
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:93861121..93863513-chr11:93882964..93886089,4	K562	blood:
2	chr11:93862864..93865828-chr11:93884142..93886084,2	MCF-7	breast:
3	chr11:93866030..93868662-chr11:93884389..93887583,3	K562	blood:
4	chr11:93880754..93883524-chr11:93885061..93886886,2	K562	blood:
5	chr11:93877656..93879395-chr11:93882351..93886074,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110218	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11822030	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825553	0.96[AFR][1000 genomes]
rs11825559	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11826118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11826223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12276417	1.00[EUR][1000 genomes]
rs1518556	1.00[EUR][1000 genomes]
rs1518557	1.00[EUR][1000 genomes]
rs1518558	1.00[EUR][1000 genomes]
rs1518559	1.00[EUR][1000 genomes]
rs16919776	1.00[EUR][1000 genomes]
rs16919850	1.00[EUR][1000 genomes]
rs16919852	1.00[EUR][1000 genomes]
rs16919866	1.00[EUR][1000 genomes]
rs16919972	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2460043	1.00[EUR][1000 genomes]
rs2511377	1.00[EUR][1000 genomes]
rs58814864	1.00[EUR][1000 genomes]
rs59912573	1.00[AMR][1000 genomes]
rs60464761	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60818592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102046	1.00[EUR][1000 genomes]
rs7120920	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73512239	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512242	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512245	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512246	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512249	1.00[AMR][1000 genomes]
rs73512252	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73512253	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512254	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73525500	1.00[AMR][1000 genomes]
rs73555258	1.00[AMR][1000 genomes]
rs73555259	1.00[AMR][1000 genomes]
rs73555263	1.00[AMR][1000 genomes]
rs983327	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv898185	chr11:93851048-93927529	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv469980	chr11:93864321-93962121	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv468795	chr11:93864321-93964917	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv555966	chr11:93864321-93964917	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv517664	chr11:93866147-93913036	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93868200-93886600	Weak transcription	Fetal Brain Female	brain
2	chr11:93873800-93887200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:93880200-93886400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:93880400-93886400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr11:93880600-93886200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:93880800-93886200	Enhancers	HMEC	breast
7	chr11:93880800-93886600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:93880800-93887400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:93881000-93886600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr11:93881000-93888000	Enhancers	Fetal Intestine Large	intestine
11	chr11:93881200-93886800	Enhancers	NHLF	lung
12	chr11:93881200-93887000	Weak transcription	Ovary	ovary
13	chr11:93881400-93887000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:93881400-93887000	Weak transcription	Dnd41	blood
15	chr11:93881400-93887600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:93881400-93889000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr11:93882000-93886200	Enhancers	HUVEC	blood vessel
18	chr11:93882000-93886400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:93882000-93886400	Enhancers	Small Intestine	intestine
20	chr11:93882000-93886600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:93882000-93886600	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr11:93882200-93886000	Enhancers	HSMM	muscle
23	chr11:93882200-93886200	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr11:93882400-93886200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:93882400-93886200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:93882400-93886200	Enhancers	Pancreas	Pancrea
27	chr11:93882400-93887600	Enhancers	Gastric	stomach
28	chr11:93882400-93896800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr11:93882600-93885800	Weak transcription	Brain Germinal Matrix	brain
30	chr11:93882600-93886000	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr11:93882800-93886200	Enhancers	Aorta	Aorta
32	chr11:93882800-93887600	Enhancers	Stomach Mucosa	stomach
33	chr11:93882800-93889400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr11:93882800-93895400	Weak transcription	Fetal Stomach	stomach
35	chr11:93883000-93887600	Enhancers	Placenta Amnion	Placenta Amnion
36	chr11:93883000-93887800	Enhancers	Brain Anterior Caudate	brain
37	chr11:93883000-93888600	Weak transcription	Fetal Kidney	kidney
38	chr11:93883000-93906600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:93883200-93886000	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr11:93883200-93886000	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr11:93883200-93886200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:93883200-93886800	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr11:93883200-93886800	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr11:93883200-93889400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr11:93883200-93892600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr11:93883400-93886000	Enhancers	H1 Cell Line	embryonic stem cell
47	chr11:93883400-93886000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:93883400-93886000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr11:93883400-93887200	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr11:93883400-93889200	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links