Variant report
| Variant | rs16919776 |
|---|---|
| Chromosome Location | chr11:93724551-93724552 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:93724420..93726827-chr11:93860849..93862959,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000110218 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs11822030 | 1.00[EUR][1000 genomes] |
| rs11825559 | 1.00[EUR][1000 genomes] |
| rs11826118 | 1.00[EUR][1000 genomes] |
| rs11826223 | 1.00[EUR][1000 genomes] |
| rs12276417 | 1.00[EUR][1000 genomes] |
| rs1518556 | 1.00[EUR][1000 genomes] |
| rs1518557 | 1.00[EUR][1000 genomes] |
| rs1518558 | 1.00[EUR][1000 genomes] |
| rs1518559 | 1.00[EUR][1000 genomes] |
| rs16919850 | 1.00[EUR][1000 genomes] |
| rs16919852 | 1.00[EUR][1000 genomes] |
| rs16919866 | 1.00[EUR][1000 genomes] |
| rs16919972 | 1.00[EUR][1000 genomes] |
| rs2460043 | 1.00[EUR][1000 genomes] |
| rs2511377 | 1.00[EUR][1000 genomes] |
| rs58814864 | 1.00[EUR][1000 genomes] |
| rs60464761 | 1.00[EUR][1000 genomes] |
| rs60818592 | 1.00[EUR][1000 genomes] |
| rs7102046 | 1.00[EUR][1000 genomes] |
| rs7120920 | 1.00[EUR][1000 genomes] |
| rs73512239 | 1.00[EUR][1000 genomes] |
| rs73512242 | 1.00[EUR][1000 genomes] |
| rs73512245 | 1.00[EUR][1000 genomes] |
| rs73512246 | 1.00[EUR][1000 genomes] |
| rs73512252 | 1.00[EUR][1000 genomes] |
| rs73512253 | 1.00[EUR][1000 genomes] |
| rs73512254 | 1.00[EUR][1000 genomes] |
| rs73512255 | 1.00[EUR][1000 genomes] |
| rs73512256 | 1.00[EUR][1000 genomes] |
| rs73512257 | 1.00[EUR][1000 genomes] |
| rs73512258 | 1.00[EUR][1000 genomes] |
| rs73512260 | 1.00[EUR][1000 genomes] |
| rs983327 | 1.00[EUR][1000 genomes] |
| rs9943554 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049467 | chr11:93651025-93778717 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv555965 | chr11:93713911-93747735 | Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
