Variant report

Variant	rs11825559
Chromosome Location	chr11:93889282-93889283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11822030	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825553	0.94[AFR][1000 genomes]
rs11826118	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11826223	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12276417	1.00[EUR][1000 genomes]
rs1518556	1.00[EUR][1000 genomes]
rs1518557	1.00[EUR][1000 genomes]
rs1518558	1.00[EUR][1000 genomes]
rs1518559	1.00[EUR][1000 genomes]
rs16919776	1.00[EUR][1000 genomes]
rs16919850	1.00[EUR][1000 genomes]
rs16919852	1.00[EUR][1000 genomes]
rs16919866	1.00[EUR][1000 genomes]
rs16919972	0.86[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2460043	1.00[EUR][1000 genomes]
rs2511377	1.00[EUR][1000 genomes]
rs58814864	1.00[EUR][1000 genomes]
rs59912573	1.00[AMR][1000 genomes]
rs60464761	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60818592	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102046	1.00[EUR][1000 genomes]
rs7120920	1.00[EUR][1000 genomes]
rs73512239	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512242	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512245	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512246	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512249	1.00[AMR][1000 genomes]
rs73512252	1.00[EUR][1000 genomes]
rs73512253	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512254	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512255	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512256	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512257	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512258	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512260	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73525500	1.00[AMR][1000 genomes]
rs73555258	1.00[AMR][1000 genomes]
rs73555259	1.00[AMR][1000 genomes]
rs73555263	1.00[AMR][1000 genomes]
rs983327	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv898185	chr11:93851048-93927529	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv469980	chr11:93864321-93962121	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv468795	chr11:93864321-93964917	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv555966	chr11:93864321-93964917	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv517664	chr11:93866147-93913036	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93882400-93896800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr11:93882800-93889400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:93882800-93895400	Weak transcription	Fetal Stomach	stomach
4	chr11:93883000-93906600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:93883200-93889400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:93883200-93892600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr11:93883400-93906400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr11:93884000-93912800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr11:93884200-93895200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:93884400-93905400	Weak transcription	Right Ventricle	heart
11	chr11:93885000-93890600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr11:93885200-93916200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:93885400-93899400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr11:93885400-93911200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr11:93885800-93897600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr11:93886000-93890200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:93886000-93890800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:93886000-93896600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:93886000-93896800	Weak transcription	Lung	lung
20	chr11:93886000-93903400	Weak transcription	HSMM	muscle
21	chr11:93886000-93905200	Weak transcription	HSMMtube	muscle
22	chr11:93886000-93913000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr11:93886200-93889800	Weak transcription	Psoas Muscle	Psoas
24	chr11:93886200-93890000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:93886200-93891800	Weak transcription	Hela-S3	cervix
26	chr11:93886200-93910800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:93886400-93890200	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr11:93886600-93889800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:93886600-93889800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:93886600-93913000	Weak transcription	K562	blood
31	chr11:93886800-93890200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:93886800-93890200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:93886800-93890400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:93886800-93912800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr11:93887000-93911600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr11:93887200-93889800	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr11:93887200-93889800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr11:93887400-93889400	Weak transcription	Fetal Thymus	thymus
39	chr11:93887400-93889800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:93887400-93898800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr11:93887600-93889800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:93887600-93890000	Weak transcription	Thymus	Thymus
43	chr11:93887600-93890600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr11:93887600-93891000	Weak transcription	GM12878-XiMat	blood
45	chr11:93887600-93891400	Weak transcription	Brain Germinal Matrix	brain
46	chr11:93887600-93894800	Weak transcription	NHLF	lung
47	chr11:93887600-93899400	Weak transcription	Fetal Lung	lung
48	chr11:93887600-93902000	Weak transcription	Gastric	stomach
49	chr11:93887600-93903800	Weak transcription	Left Ventricle	heart
50	chr11:93887600-93904600	Weak transcription	Aorta	Aorta

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