Variant report

Variant	rs12276417
Chromosome Location	chr11:93755331-93755332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11020623	1.00[AMR][1000 genomes]
rs11020626	1.00[AMR][1000 genomes]
rs11822030	1.00[EUR][1000 genomes]
rs11825559	1.00[EUR][1000 genomes]
rs11826118	1.00[EUR][1000 genomes]
rs11826223	1.00[EUR][1000 genomes]
rs12283620	1.00[AMR][1000 genomes]
rs12283642	1.00[AMR][1000 genomes]
rs12284299	1.00[AMR][1000 genomes]
rs12293374	1.00[AMR][1000 genomes]
rs1518556	1.00[EUR][1000 genomes]
rs1518557	1.00[EUR][1000 genomes]
rs1518558	1.00[EUR][1000 genomes]
rs1518559	1.00[EUR][1000 genomes]
rs16919776	1.00[EUR][1000 genomes]
rs16919850	1.00[EUR][1000 genomes]
rs16919852	1.00[EUR][1000 genomes]
rs16919866	1.00[EUR][1000 genomes]
rs16919972	1.00[EUR][1000 genomes]
rs2460043	1.00[EUR][1000 genomes]
rs2511377	1.00[EUR][1000 genomes]
rs58814864	1.00[EUR][1000 genomes]
rs60464761	1.00[EUR][1000 genomes]
rs60818592	1.00[EUR][1000 genomes]
rs7102046	1.00[EUR][1000 genomes]
rs7120920	1.00[EUR][1000 genomes]
rs73512239	1.00[EUR][1000 genomes]
rs73512242	1.00[EUR][1000 genomes]
rs73512245	1.00[EUR][1000 genomes]
rs73512246	1.00[EUR][1000 genomes]
rs73512252	1.00[EUR][1000 genomes]
rs73512253	1.00[EUR][1000 genomes]
rs73512254	1.00[EUR][1000 genomes]
rs73512255	1.00[EUR][1000 genomes]
rs73512256	1.00[EUR][1000 genomes]
rs73512257	1.00[EUR][1000 genomes]
rs73512258	1.00[EUR][1000 genomes]
rs73512260	1.00[EUR][1000 genomes]
rs983327	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93752200-93758000	Weak transcription	NH-A	brain
2	chr11:93753800-93755800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:93753800-93756200	Flanking Active TSS	NHEK	skin
4	chr11:93754000-93756200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:93754400-93756200	Flanking Active TSS	HMEC	breast
6	chr11:93754800-93755400	Weak transcription	Aorta	Aorta
7	chr11:93755000-93757400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:93755200-93756000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:93755200-93756200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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