Variant report

Variant	rs16919972
Chromosome Location	chr11:93904043-93904044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:93861143..93863415-chr11:93902863..93904604,2	MCF-7	breast:
2	chr11:93899070..93901930-chr11:93903657..93905599,2	K562	blood:
3	chr11:93899070..93901614-chr11:93903324..93905599,3	K562	blood:

Variant related genes	Relation type
ENSG00000110218	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11822030	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825553	0.82[AFR][1000 genomes]
rs11825559	0.86[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11826118	1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11826223	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12276417	1.00[EUR][1000 genomes]
rs1518556	1.00[EUR][1000 genomes]
rs1518557	1.00[EUR][1000 genomes]
rs1518558	1.00[EUR][1000 genomes]
rs1518559	1.00[EUR][1000 genomes]
rs16919776	1.00[EUR][1000 genomes]
rs16919850	1.00[EUR][1000 genomes]
rs16919852	1.00[EUR][1000 genomes]
rs16919866	1.00[EUR][1000 genomes]
rs2460043	1.00[EUR][1000 genomes]
rs2511377	1.00[EUR][1000 genomes]
rs58814864	1.00[EUR][1000 genomes]
rs59912573	1.00[AMR][1000 genomes]
rs60464761	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60818592	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102046	1.00[EUR][1000 genomes]
rs7120920	1.00[EUR][1000 genomes]
rs73512239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512242	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512245	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512246	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512249	1.00[AMR][1000 genomes]
rs73512252	1.00[EUR][1000 genomes]
rs73512253	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512254	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512255	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512256	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512257	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512258	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512260	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73525500	1.00[AMR][1000 genomes]
rs73555258	1.00[AMR][1000 genomes]
rs73555259	1.00[AMR][1000 genomes]
rs73555263	1.00[AMR][1000 genomes]
rs7925027	1.00[MEX][hapmap]
rs983327	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv898185	chr11:93851048-93927529	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv469980	chr11:93864321-93962121	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv468795	chr11:93864321-93964917	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv555966	chr11:93864321-93964917	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv517664	chr11:93866147-93913036	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93883000-93906600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr11:93883400-93906400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr11:93884000-93912800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:93884400-93905400	Weak transcription	Right Ventricle	heart
5	chr11:93885200-93916200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:93885400-93911200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr11:93886000-93905200	Weak transcription	HSMMtube	muscle
8	chr11:93886000-93913000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:93886200-93910800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:93886600-93913000	Weak transcription	K562	blood
11	chr11:93886800-93912800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:93887000-93911600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:93887600-93904600	Weak transcription	Aorta	Aorta
14	chr11:93887600-93907600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:93887600-93907800	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:93887600-93908200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:93887600-93908800	Weak transcription	Adipose Nuclei	Adipose
18	chr11:93887600-93910600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr11:93887600-93910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr11:93887600-93911600	Weak transcription	Spleen	Spleen
21	chr11:93887800-93904800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:93887800-93907800	Weak transcription	HMEC	breast
23	chr11:93887800-93908000	Weak transcription	NH-A	brain
24	chr11:93887800-93910800	Weak transcription	Liver	Liver
25	chr11:93888000-93907200	Weak transcription	NHDF-Ad	bronchial
26	chr11:93889600-93908600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr11:93889800-93905400	Weak transcription	Fetal Thymus	thymus
28	chr11:93889800-93906600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr11:93889800-93907400	Weak transcription	Primary T cells from cord blood	blood
30	chr11:93889800-93908200	Weak transcription	NHEK	skin
31	chr11:93889800-93910800	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr11:93889800-93911400	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr11:93889800-93912800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr11:93890200-93906600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:93890200-93910800	Weak transcription	Thymus	Thymus
36	chr11:93895800-93911000	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr11:93896000-93909400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:93896200-93905200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:93896200-93911600	Weak transcription	Ovary	ovary
40	chr11:93897800-93920000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:93900000-93907400	Weak transcription	Primary B cells from peripheral blood	blood
42	chr11:93900200-93904800	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr11:93900200-93910600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:93900400-93904200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr11:93900400-93904200	Weak transcription	Lung	lung
46	chr11:93900400-93907400	Weak transcription	Fetal Muscle Leg	muscle
47	chr11:93900400-93910800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:93900400-93916000	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr11:93900600-93904800	Weak transcription	Fetal Intestine Small	intestine
50	chr11:93900600-93905800	Weak transcription	Primary B cells from cord blood	blood

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