Variant report

Variant	rs16919852
Chromosome Location	chr11:93768154-93768155
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11822030	1.00[EUR][1000 genomes]
rs11825559	1.00[EUR][1000 genomes]
rs11826118	1.00[EUR][1000 genomes]
rs11826223	1.00[EUR][1000 genomes]
rs12276417	1.00[EUR][1000 genomes]
rs1518554	1.00[AMR][1000 genomes]
rs1518556	1.00[EUR][1000 genomes]
rs1518557	1.00[EUR][1000 genomes]
rs1518558	1.00[EUR][1000 genomes]
rs1518559	1.00[EUR][1000 genomes]
rs16919776	1.00[EUR][1000 genomes]
rs16919850	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16919866	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16919972	1.00[EUR][1000 genomes]
rs2460043	1.00[EUR][1000 genomes]
rs2511377	1.00[EUR][1000 genomes]
rs58814864	1.00[EUR][1000 genomes]
rs60464761	1.00[EUR][1000 genomes]
rs60818592	1.00[EUR][1000 genomes]
rs7102046	1.00[EUR][1000 genomes]
rs7120920	1.00[EUR][1000 genomes]
rs73512239	1.00[EUR][1000 genomes]
rs73512242	1.00[EUR][1000 genomes]
rs73512245	1.00[EUR][1000 genomes]
rs73512246	1.00[EUR][1000 genomes]
rs73512252	1.00[EUR][1000 genomes]
rs73512253	1.00[EUR][1000 genomes]
rs73512254	1.00[EUR][1000 genomes]
rs73512255	1.00[EUR][1000 genomes]
rs73512256	1.00[EUR][1000 genomes]
rs73512257	1.00[EUR][1000 genomes]
rs73512258	1.00[EUR][1000 genomes]
rs73512260	1.00[EUR][1000 genomes]
rs983327	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93766800-93768400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:93767000-93768200	Enhancers	HMEC	breast
3	chr11:93767000-93768400	Enhancers	NHEK	skin
4	chr11:93768000-93769400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:93768000-93779800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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