Variant report

Variant	rs61671722
Chromosome Location	chr11:93877154-93877155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:93875120..93879114-chr11:93880737..93884211,6	K562	blood:
2	chr11:93867029..93870976-chr11:93873101..93877852,6	K562	blood:
3	chr11:93861895..93865118-chr11:93874866..93877940,3	K562	blood:

Variant related genes	Relation type
ENSG00000110218	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11828881	0.85[ASN][1000 genomes]
rs58049964	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs58216749	1.00[EUR][1000 genomes]
rs58863592	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59768849	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs67060752	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7102046	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7120920	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72968772	1.00[EUR][1000 genomes]
rs72968780	1.00[EUR][1000 genomes]
rs72968788	0.81[ASN][1000 genomes]
rs72970708	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72970709	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72970719	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72970727	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73512252	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7925027	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv508651	chr11:93834300-93880470	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv898185	chr11:93851048-93927529	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv469980	chr11:93864321-93962121	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv468795	chr11:93864321-93964917	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv555966	chr11:93864321-93964917	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv517664	chr11:93866147-93913036	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93864000-93879800	Weak transcription	Primary T cells from cord blood	blood
2	chr11:93865400-93881600	Weak transcription	Fetal Intestine Small	intestine
3	chr11:93867000-93879800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr11:93867200-93882000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:93867600-93880000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr11:93868200-93886600	Weak transcription	Fetal Brain Female	brain
7	chr11:93868400-93880600	Weak transcription	Fetal Thymus	thymus
8	chr11:93868600-93879400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:93868800-93881000	Weak transcription	Fetal Intestine Large	intestine
10	chr11:93868800-93883800	Weak transcription	Primary B cells from cord blood	blood
11	chr11:93869000-93877400	Weak transcription	Liver	Liver
12	chr11:93869400-93877600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr11:93870200-93879200	Weak transcription	Dnd41	blood
14	chr11:93870200-93879600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr11:93870600-93881000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:93870800-93879600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr11:93873600-93878200	Enhancers	NHEK	skin
18	chr11:93873600-93878600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:93873800-93879400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr11:93873800-93882200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:93873800-93887200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:93874200-93877800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr11:93874200-93877800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:93874200-93879600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:93874400-93880200	Enhancers	HepG2	liver
26	chr11:93874600-93880800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:93874800-93877800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:93875000-93877400	Enhancers	Fetal Heart	heart
29	chr11:93875000-93878400	Enhancers	Placenta Amnion	Placenta Amnion
30	chr11:93875000-93879600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr11:93875000-93880000	Enhancers	A549	lung
32	chr11:93875000-93881000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:93875200-93879600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:93875400-93877200	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr11:93875400-93878000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:93875400-93882600	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr11:93875600-93877400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:93875600-93877400	Weak transcription	Esophagus	oesophagus
39	chr11:93875600-93877400	Weak transcription	Gastric	stomach
40	chr11:93875600-93879200	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr11:93875600-93879600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr11:93875600-93879600	Weak transcription	Ovary	ovary
43	chr11:93875600-93880000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr11:93875600-93882400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr11:93875600-93882400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr11:93875800-93877200	Weak transcription	HMEC	breast
47	chr11:93875800-93877400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:93875800-93877400	Enhancers	Brain Anterior Caudate	brain
49	chr11:93875800-93877400	Weak transcription	Right Ventricle	heart
50	chr11:93875800-93877400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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