Variant report

Variant	rs58056814
Chromosome Location	chr11:10661029-10661030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11822861	1.00[AMR][1000 genomes]
rs11827592	1.00[AMR][1000 genomes]
rs55730838	1.00[AMR][1000 genomes]
rs55942273	1.00[AMR][1000 genomes]
rs56009251	1.00[AMR][1000 genomes]
rs56161511	1.00[AMR][1000 genomes]
rs57991096	1.00[AMR][1000 genomes]
rs58560142	1.00[AMR][1000 genomes]
rs59433293	1.00[AMR][1000 genomes]
rs61484295	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10629400-10663600	Weak transcription	Fetal Intestine Large	intestine
2	chr11:10629600-10662800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:10639800-10661600	Weak transcription	Gastric	stomach
4	chr11:10640600-10661400	Weak transcription	Left Ventricle	heart
5	chr11:10646000-10661600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:10646000-10679000	Weak transcription	Fetal Lung	lung
7	chr11:10646200-10661400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:10646200-10679200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr11:10646800-10667600	Weak transcription	Right Atrium	heart
10	chr11:10648000-10661200	Weak transcription	Spleen	Spleen
11	chr11:10648000-10661400	Weak transcription	Adipose Nuclei	Adipose
12	chr11:10650400-10663400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:10650400-10678600	Weak transcription	Right Ventricle	heart
14	chr11:10651800-10670600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:10652400-10668200	Weak transcription	NHLF	lung
16	chr11:10653200-10668200	Weak transcription	Esophagus	oesophagus
17	chr11:10653600-10663600	Weak transcription	Lung	lung
18	chr11:10653600-10669000	Weak transcription	Fetal Intestine Small	intestine
19	chr11:10655400-10661400	Weak transcription	Placenta	Placenta
20	chr11:10658400-10663800	Enhancers	Brain Anterior Caudate	brain
21	chr11:10658600-10662400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:10658600-10662400	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr11:10658600-10665000	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr11:10658800-10661400	Enhancers	Fetal Brain Male	brain
25	chr11:10658800-10662000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:10658800-10662400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:10658800-10676600	Enhancers	Primary B cells from peripheral blood	blood
28	chr11:10659000-10662000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:10659000-10664200	Enhancers	Fetal Muscle Leg	muscle
30	chr11:10659200-10661200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:10659200-10661400	Enhancers	Fetal Brain Female	brain
32	chr11:10659200-10662000	Enhancers	Rectal Smooth Muscle	rectum
33	chr11:10659200-10663000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:10659600-10661400	Weak transcription	Aorta	Aorta
35	chr11:10659600-10661400	Weak transcription	Brain Substantia Nigra	brain
36	chr11:10659600-10661600	Enhancers	Osteobl	bone
37	chr11:10659800-10661200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr11:10659800-10661200	Enhancers	Fetal Stomach	stomach
39	chr11:10659800-10666000	Weak transcription	Ovary	ovary
40	chr11:10660000-10661200	Weak transcription	Brain Angular Gyrus	brain
41	chr11:10660000-10661200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr11:10660000-10661400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr11:10660000-10661400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr11:10660000-10661600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr11:10660000-10662800	Weak transcription	NHDF-Ad	bronchial
46	chr11:10660200-10661200	Enhancers	Primary B cells from cord blood	blood
47	chr11:10660200-10661600	Weak transcription	Fetal Heart	heart
48	chr11:10660400-10661200	Weak transcription	Brain Hippocampus Middle	brain
49	chr11:10660400-10663600	Weak transcription	Colonic Mucosa	Colon
50	chr11:10660400-10667600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links