Variant report

Variant	rs11822861
Chromosome Location	chr11:10784955-10784956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CUX1	chr11:10784718-10785016	GM12878	blood:	n/a	chr11:10784819-10784828
2	POLR2A	chr11:10783319-10787220	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10771310..10773664-chr11:10782107..10785297,3	K562	blood:
2	chr11:10777009..10780642-chr11:10782643..10786091,3	K562	blood:

Variant related genes	Relation type
CTR9	TF binding region
ENSG00000198730	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11042942	1.00[EUR][1000 genomes]
rs11821886	1.00[AMR][1000 genomes]
rs11823290	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11827592	1.00[AMR][1000 genomes]
rs2232912	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55730838	1.00[AMR][1000 genomes]
rs56009251	1.00[AMR][1000 genomes]
rs56161511	1.00[AMR][1000 genomes]
rs57991096	1.00[AMR][1000 genomes]
rs58056814	1.00[AMR][1000 genomes]
rs58366863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58432384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58560142	1.00[AMR][1000 genomes]
rs59239356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59433293	1.00[AMR][1000 genomes]
rs59882147	1.00[EUR][1000 genomes]
rs60370256	1.00[EUR][1000 genomes]
rs61997166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419666	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419672	1.00[AMR][1000 genomes]
rs73419674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419676	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419688	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419702	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421506	1.00[EUR][1000 genomes]
rs73421514	1.00[EUR][1000 genomes]
rs73421517	1.00[EUR][1000 genomes]
rs73421520	1.00[EUR][1000 genomes]
rs73421534	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1037639	chr11:10737790-10871809	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv1040606	chr11:10763753-10995698	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10773600-10795600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:10773600-10797000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:10773600-10806000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:10773800-10807400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:10774200-10802600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:10774400-10787400	Weak transcription	Fetal Heart	heart
7	chr11:10774400-10787600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:10774400-10787800	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:10774400-10787800	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:10774400-10787800	Weak transcription	Stomach Mucosa	stomach
11	chr11:10774400-10798600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr11:10774400-10798600	Strong transcription	Osteobl	bone
13	chr11:10774400-10799000	Strong transcription	HSMM	muscle
14	chr11:10774400-10799400	Strong transcription	NH-A	brain
15	chr11:10774400-10801800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:10774400-10802000	Strong transcription	Placenta	Placenta
17	chr11:10774600-10787400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr11:10774600-10792200	Strong transcription	Skeletal Muscle Female	skeletal muscle
19	chr11:10774600-10799200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:10774600-10802000	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr11:10774600-10802200	Strong transcription	Fetal Thymus	thymus
22	chr11:10774800-10789600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:10774800-10790000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:10774800-10792000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:10774800-10792200	Strong transcription	Adipose Nuclei	Adipose
26	chr11:10774800-10799000	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr11:10774800-10799600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr11:10774800-10801800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:10774800-10801800	Strong transcription	Duodenum Mucosa	Duodenum
30	chr11:10774800-10802000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:10774800-10802000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr11:10774800-10802000	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr11:10774800-10802200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:10775000-10787600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr11:10775000-10787800	Strong transcription	Left Ventricle	heart
36	chr11:10775000-10802000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr11:10775000-10802200	Strong transcription	Fetal Muscle Trunk	muscle
38	chr11:10775000-10802200	Strong transcription	Fetal Muscle Leg	muscle
39	chr11:10775000-10802200	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr11:10775200-10792200	Strong transcription	Liver	Liver
41	chr11:10775200-10801200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr11:10775200-10801400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr11:10775200-10802000	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr11:10775200-10802200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr11:10775400-10796400	Strong transcription	Hela-S3	cervix
46	chr11:10775400-10798400	Strong transcription	Brain Anterior Caudate	brain
47	chr11:10775400-10798400	Strong transcription	Brain Hippocampus Middle	brain
48	chr11:10775400-10801000	Strong transcription	Fetal Intestine Large	intestine
49	chr11:10775400-10802000	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr11:10775600-10801800	Strong transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links