Variant report

Variant	rs11821886
Chromosome Location	chr11:10859551-10859552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11822861	1.00[AMR][1000 genomes]
rs11823290	1.00[AMR][1000 genomes]
rs11827592	1.00[AMR][1000 genomes]
rs2232912	1.00[AMR][1000 genomes]
rs55730838	1.00[AMR][1000 genomes]
rs56009251	1.00[AMR][1000 genomes]
rs56161511	1.00[AMR][1000 genomes]
rs57991096	1.00[AMR][1000 genomes]
rs58366863	1.00[AMR][1000 genomes]
rs58432384	1.00[AMR][1000 genomes]
rs58560142	1.00[AMR][1000 genomes]
rs59239356	1.00[AMR][1000 genomes]
rs59433293	1.00[AMR][1000 genomes]
rs61997166	1.00[AMR][1000 genomes]
rs73419666	1.00[AMR][1000 genomes]
rs73419669	1.00[AMR][1000 genomes]
rs73419672	1.00[AMR][1000 genomes]
rs73419674	1.00[AMR][1000 genomes]
rs73419676	1.00[AMR][1000 genomes]
rs73419678	1.00[AMR][1000 genomes]
rs73419688	1.00[AMR][1000 genomes]
rs73419698	1.00[AMR][1000 genomes]
rs73419699	1.00[AMR][1000 genomes]
rs73419702	1.00[AMR][1000 genomes]
rs73421505	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037639	chr11:10737790-10871809	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv1040606	chr11:10763753-10995698	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10831800-10866200	Weak transcription	Brain Substantia Nigra	brain
2	chr11:10838400-10873000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:10840800-10866400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:10847000-10873000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr11:10847600-10862200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr11:10847600-10872800	Weak transcription	Primary B cells from cord blood	blood
7	chr11:10849200-10872800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:10854600-10873400	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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