Variant report

Variant	rs55730838
Chromosome Location	chr11:10714817-10714818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10714480..10714980-chr2:10183367..10183928,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172059	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11821886	1.00[AMR][1000 genomes]
rs11822861	1.00[AMR][1000 genomes]
rs11827592	1.00[AMR][1000 genomes]
rs2232912	1.00[AMR][1000 genomes]
rs56009251	1.00[AMR][1000 genomes]
rs56161511	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57991096	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58056814	1.00[AMR][1000 genomes]
rs58366863	1.00[AMR][1000 genomes]
rs58432384	1.00[AMR][1000 genomes]
rs58560142	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59239356	1.00[AMR][1000 genomes]
rs59433293	1.00[AMR][1000 genomes]
rs61484295	1.00[AMR][1000 genomes]
rs73419666	1.00[AMR][1000 genomes]
rs73419669	1.00[AMR][1000 genomes]
rs73419672	1.00[AMR][1000 genomes]
rs73419674	1.00[AMR][1000 genomes]
rs73419676	1.00[AMR][1000 genomes]
rs73419678	1.00[AMR][1000 genomes]
rs73419688	1.00[AMR][1000 genomes]
rs73419698	1.00[AMR][1000 genomes]
rs73419699	1.00[AMR][1000 genomes]
rs73419702	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv7676	chr11:10689144-10734139	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10711000-10715400	Active TSS	Aorta	Aorta
2	chr11:10711800-10715200	Active TSS	Brain Substantia Nigra	brain
3	chr11:10711800-10715400	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr11:10711800-10715600	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr11:10712000-10715200	Active TSS	Colonic Mucosa	Colon
6	chr11:10712000-10715200	Active TSS	Duodenum Mucosa	Duodenum
7	chr11:10712000-10715600	Active TSS	Brain Anterior Caudate	brain
8	chr11:10712000-10715600	Active TSS	Brain Hippocampus Middle	brain
9	chr11:10712400-10715200	Active TSS	Rectal Mucosa Donor 31	rectum
10	chr11:10712400-10715400	Active TSS	Colon Smooth Muscle	Colon
11	chr11:10712400-10715600	Active TSS	Esophagus	oesophagus
12	chr11:10712600-10715000	Active TSS	Brain Cingulate Gyrus	brain
13	chr11:10712600-10715200	Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr11:10712800-10715400	Active TSS	Brain Angular Gyrus	brain
15	chr11:10712800-10715400	Active TSS	Ovary	ovary
16	chr11:10713000-10715400	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr11:10713200-10715600	Active TSS	Fetal Intestine Large	intestine
18	chr11:10713200-10716400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:10713400-10715600	Active TSS	Fetal Intestine Small	intestine
20	chr11:10713800-10715000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:10713800-10715000	Enhancers	Spleen	Spleen
22	chr11:10713800-10715200	Active TSS	Left Ventricle	heart
23	chr11:10714000-10715000	Flanking Active TSS	Fetal Stomach	stomach
24	chr11:10714000-10715200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr11:10714000-10715200	Active TSS	Right Atrium	heart
26	chr11:10714000-10715600	Enhancers	H1 Cell Line	embryonic stem cell
27	chr11:10714000-10715600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:10714000-10715600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:10714000-10715600	Flanking Active TSS	Fetal Muscle Leg	muscle
30	chr11:10714000-10716000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:10714000-10716000	Enhancers	Placenta	Placenta
32	chr11:10714000-10717200	Enhancers	Fetal Thymus	thymus
33	chr11:10714200-10715000	Active TSS	Small Intestine	intestine
34	chr11:10714200-10715000	Active TSS	Stomach Mucosa	stomach
35	chr11:10714200-10715200	Active TSS	Rectal Smooth Muscle	rectum
36	chr11:10714200-10715400	Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr11:10714200-10715600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
38	chr11:10714400-10715000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
39	chr11:10714400-10715200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:10714400-10715400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:10714400-10715600	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr11:10714400-10715600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:10714400-10715800	Flanking Active TSS	Fetal Lung	lung
44	chr11:10714400-10716000	Flanking Active TSS	Osteobl	bone
45	chr11:10714600-10715000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr11:10714600-10715200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr11:10714600-10715200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:10714600-10715200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
49	chr11:10714600-10715600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:10714600-10715600	Flanking Active TSS	NHDF-Ad	bronchial

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