Variant report

Variant	rs73419676
Chromosome Location	chr11:10883868-10883869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:10883473-10884351	PANC-1	pancreas:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:10882561..10884213-chr11:10887430..10889201,2	K562	blood:
2	chr11:10881530..10885502-chr11:10919800..10923230,5	MCF-7	breast:
3	chr11:10875813..10884237-chr11:10918851..10925690,14	K562	blood:
4	chr11:10880578..10884141-chr11:10920244..10923137,3	K562	blood:
5	chr11:10818714..10820617-chr11:10883388..10886324,2	K562	blood:
6	chr11:10882522..10884244-chr11:10894776..10896466,2	K562	blood:
7	chr11:10827202..10834699-chr11:10873450..10884211,37	MCF-7	breast:
8	chr11:10771822..10774377-chr11:10882388..10885311,2	K562	blood:
9	chr11:10879749..10881694-chr11:10883008..10885226,2	MCF-7	breast:

No data

Variant related genes	Relation type
ZBED5-AS1	TF binding region
ZBED5	TF binding region
ENSG00000236287	Chromatin interaction
ENSG00000110321	Chromatin interaction
ENSG00000246308	Chromatin interaction
ENSG00000247271	Chromatin interaction
ENSG00000198730	Chromatin interaction
ENSG00000250041	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11042942	1.00[EUR][1000 genomes]
rs11821886	1.00[AMR][1000 genomes]
rs11822861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11823290	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11827592	1.00[AMR][1000 genomes]
rs2232912	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55730838	1.00[AMR][1000 genomes]
rs56009251	1.00[AMR][1000 genomes]
rs56161511	1.00[AMR][1000 genomes]
rs57991096	1.00[AMR][1000 genomes]
rs58366863	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58432384	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58560142	1.00[AMR][1000 genomes]
rs59239356	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59433293	1.00[AMR][1000 genomes]
rs59882147	1.00[EUR][1000 genomes]
rs60370256	1.00[EUR][1000 genomes]
rs61997166	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73419674	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419678	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419688	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419698	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419699	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419702	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421505	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421506	1.00[EUR][1000 genomes]
rs73421514	1.00[EUR][1000 genomes]
rs73421517	1.00[EUR][1000 genomes]
rs73421520	1.00[EUR][1000 genomes]
rs73421534	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040606	chr11:10763753-10995698	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10880800-10884200	Weak transcription	Ovary	ovary
2	chr11:10880800-10888400	Weak transcription	Right Ventricle	heart
3	chr11:10880800-10900000	Weak transcription	Pancreas	Pancrea
4	chr11:10881000-10886200	Weak transcription	Fetal Stomach	stomach
5	chr11:10881200-10884000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr11:10881200-10884000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr11:10881200-10884000	Weak transcription	Fetal Thymus	thymus
8	chr11:10881200-10884200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:10881200-10886000	Weak transcription	Osteobl	bone
10	chr11:10881200-10886200	Weak transcription	NH-A	brain
11	chr11:10881200-10888400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:10881200-10892400	Weak transcription	Psoas Muscle	Psoas
13	chr11:10881200-10896200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:10881200-10900400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr11:10881600-10884000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:10881600-10885600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:10881800-10884000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:10881800-10884000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:10881800-10884000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr11:10881800-10884000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:10881800-10884200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:10881800-10884600	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:10881800-10885800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr11:10881800-10886000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:10881800-10886000	Weak transcription	Fetal Lung	lung
26	chr11:10881800-10886000	Weak transcription	NHEK	skin
27	chr11:10881800-10887400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr11:10881800-10888400	Weak transcription	HSMM	muscle
29	chr11:10881800-10893200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:10882000-10884000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr11:10882000-10884000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:10882000-10892000	Weak transcription	Primary B cells from cord blood	blood
33	chr11:10882200-10884000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr11:10882400-10885200	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:10882400-10888200	Weak transcription	Left Ventricle	heart
36	chr11:10882400-10888800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr11:10882400-10890600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:10882600-10884000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr11:10882600-10884200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr11:10882600-10884400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr11:10882800-10884000	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr11:10882800-10885800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr11:10883400-10884600	Enhancers	A549	lung
44	chr11:10883600-10884200	Enhancers	Fetal Heart	heart
45	chr11:10883600-10884200	Enhancers	GM12878-XiMat	blood
46	chr11:10883600-10884400	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr11:10883600-10884800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:10883600-10884800	Enhancers	Primary T cells from cord blood	blood
49	chr11:10883600-10884800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:10883800-10884000	Enhancers	NHLF	lung

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