Variant report

Variant	rs61997166
Chromosome Location	chr11:10918500-10918501
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:10913203..10916284-chr11:10916634..10919208,3	K562	blood:
2	chr11:10915504..10918548-chr11:10920897..10924348,4	MCF-7	breast:
3	chr11:10877728..10881491-chr11:10917238..10922801,13	MCF-7	breast:
4	chr11:10878331..10882974-chr11:10918415..10920399,4	MCF-7	breast:
5	chr11:10878223..10880538-chr11:10918318..10920924,5	K562	blood:
6	chr11:10826424..10832562-chr11:10915178..10926428,37	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZBED5-1	chr11:10918050-10918565	ENSG00000250041

No data

Variant related genes	Relation type
ENSG00000236287	Chromatin interaction
ENSG00000246308	Chromatin interaction
ENSG00000110321	Chromatin interaction
ENSG00000247271	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11042942	1.00[EUR][1000 genomes]
rs11821886	1.00[AMR][1000 genomes]
rs11822861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11823290	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11827592	1.00[AMR][1000 genomes]
rs2232912	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56161511	1.00[AMR][1000 genomes]
rs57991096	1.00[AMR][1000 genomes]
rs58366863	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58432384	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59239356	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59882147	1.00[EUR][1000 genomes]
rs60370256	1.00[EUR][1000 genomes]
rs73419666	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419669	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419672	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73419674	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419676	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419688	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419698	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419699	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419702	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421505	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421506	1.00[EUR][1000 genomes]
rs73421514	1.00[EUR][1000 genomes]
rs73421517	1.00[EUR][1000 genomes]
rs73421520	1.00[EUR][1000 genomes]
rs73421534	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040606	chr11:10763753-10995698	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
2	nsv1038686	chr11:10903482-11269086	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10901600-10920800	Weak transcription	Pancreas	Pancrea
2	chr11:10906200-10919600	Weak transcription	NHEK	skin
3	chr11:10914200-10920000	Weak transcription	Gastric	stomach
4	chr11:10914400-10919000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr11:10914400-10921200	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:10914800-10919800	Weak transcription	Right Ventricle	heart
7	chr11:10915400-10919600	Weak transcription	HMEC	breast
8	chr11:10915400-10920400	Enhancers	Psoas Muscle	Psoas
9	chr11:10915600-10919000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:10915800-10919600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr11:10915800-10919800	Weak transcription	HSMMtube	muscle
12	chr11:10915800-10920200	Weak transcription	Stomach Mucosa	stomach
13	chr11:10916000-10919600	Weak transcription	NH-A	brain
14	chr11:10916000-10919800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:10916000-10920000	Weak transcription	Osteobl	bone
16	chr11:10916200-10919600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:10916200-10919600	Weak transcription	Hela-S3	cervix
18	chr11:10916200-10919800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:10916200-10919800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:10916200-10919800	Weak transcription	Right Atrium	heart
21	chr11:10916200-10919800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr11:10916200-10920000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr11:10916400-10919600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr11:10916400-10919600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr11:10916600-10919000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:10916600-10920400	Weak transcription	Fetal Lung	lung
27	chr11:10916600-10920800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr11:10917000-10919200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:10917000-10919200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr11:10917000-10920200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:10917000-10920400	Weak transcription	Fetal Intestine Small	intestine
32	chr11:10917200-10919600	Weak transcription	Placenta	Placenta
33	chr11:10917800-10918800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:10917800-10919600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:10917800-10919800	Enhancers	K562	blood
36	chr11:10918000-10918600	Weak transcription	Fetal Muscle Leg	muscle
37	chr11:10918000-10918800	Weak transcription	Esophagus	oesophagus
38	chr11:10918000-10919000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:10918000-10919000	Weak transcription	NHLF	lung
40	chr11:10918000-10919400	Enhancers	NHDF-Ad	bronchial
41	chr11:10918000-10921000	Enhancers	Fetal Heart	heart
42	chr11:10918200-10919600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr11:10918200-10919600	Weak transcription	Left Ventricle	heart
44	chr11:10918200-10919600	Weak transcription	A549	lung
45	chr11:10918400-10918600	Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr11:10918400-10918600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr11:10918400-10920200	Weak transcription	Fetal Intestine Large	intestine

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