Variant report

Variant	rs73419688
Chromosome Location	chr11:10895200-10895201
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10893846..10896109-chr11:10897804..10900585,2	K562	blood:
2	chr11:10882522..10884244-chr11:10894776..10896466,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11042942	1.00[EUR][1000 genomes]
rs11821886	1.00[AMR][1000 genomes]
rs11822861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11823290	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11827592	1.00[AMR][1000 genomes]
rs2232912	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55730838	1.00[AMR][1000 genomes]
rs56009251	1.00[AMR][1000 genomes]
rs56161511	1.00[AMR][1000 genomes]
rs57991096	1.00[AMR][1000 genomes]
rs58366863	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58432384	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58560142	1.00[AMR][1000 genomes]
rs59239356	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59433293	1.00[AMR][1000 genomes]
rs59882147	1.00[EUR][1000 genomes]
rs60370256	1.00[EUR][1000 genomes]
rs61997166	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419666	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419669	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419672	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73419674	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419676	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419678	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419698	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419699	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419702	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421505	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421506	1.00[EUR][1000 genomes]
rs73421514	1.00[EUR][1000 genomes]
rs73421517	1.00[EUR][1000 genomes]
rs73421520	1.00[EUR][1000 genomes]
rs73421534	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040606	chr11:10763753-10995698	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10880800-10900000	Weak transcription	Pancreas	Pancrea
2	chr11:10881200-10896200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:10881200-10900400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr11:10884600-10900000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:10886800-10915000	Weak transcription	Right Atrium	heart
6	chr11:10889000-10896000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:10889000-10896800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:10889000-10900400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:10889000-10907200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:10891000-10896800	Weak transcription	Esophagus	oesophagus
11	chr11:10892400-10897000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:10892800-10895600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
13	chr11:10893200-10895200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:10894000-10900400	Weak transcription	Osteobl	bone
15	chr11:10894200-10896000	ZNF genes & repeats	Fetal Intestine Small	intestine
16	chr11:10894200-10901400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:10894400-10896400	Weak transcription	A549	lung
18	chr11:10894400-10900200	Weak transcription	Primary T cells from cord blood	blood
19	chr11:10894600-10902400	Weak transcription	Brain Hippocampus Middle	brain
20	chr11:10895200-10895800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
21	chr11:10895200-10897200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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