Variant report

Variant	rs58560142
Chromosome Location	chr11:10719876-10719877
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11821886	1.00[AMR][1000 genomes]
rs11822861	1.00[AMR][1000 genomes]
rs11827592	1.00[AMR][1000 genomes]
rs2232912	1.00[AMR][1000 genomes]
rs55730838	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56009251	1.00[AMR][1000 genomes]
rs56161511	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57991096	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58056814	1.00[AMR][1000 genomes]
rs58366863	1.00[AMR][1000 genomes]
rs58432384	1.00[AMR][1000 genomes]
rs59239356	1.00[AMR][1000 genomes]
rs59433293	1.00[AMR][1000 genomes]
rs73419666	1.00[AMR][1000 genomes]
rs73419669	1.00[AMR][1000 genomes]
rs73419672	1.00[AMR][1000 genomes]
rs73419674	1.00[AMR][1000 genomes]
rs73419676	1.00[AMR][1000 genomes]
rs73419678	1.00[AMR][1000 genomes]
rs73419688	1.00[AMR][1000 genomes]
rs73419698	1.00[AMR][1000 genomes]
rs73419699	1.00[AMR][1000 genomes]
rs73419702	1.00[AMR][1000 genomes]
rs73421505	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv7676	chr11:10689144-10734139	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10715600-10720800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:10716000-10720800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:10716800-10720800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:10717400-10720800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:10718600-10720600	Weak transcription	Pancreas	Pancrea
6	chr11:10719000-10724000	Weak transcription	NHLF	lung
7	chr11:10719200-10720800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:10719200-10720800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:10719400-10721000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:10719400-10721000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:10719600-10722200	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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