Variant report

Variant	rs11827592
Chromosome Location	chr11:10772248-10772249
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:10772177-10772631	MCF-7	breast:	n/a	n/a
2	POLR2A	chr11:10772232-10772258	HepG2	liver:	n/a	n/a
3	CEBPB	chr11:10772188-10772917	A549	lung:	n/a	n/a
4	MAZ	chr11:10772241-10773299	K562	blood:	n/a	chr11:10772517-10772527
5	ARID3A	chr11:10772234-10772870	K562	blood:	n/a	n/a
6	JUN	chr11:10771972-10774415	K562	blood:	n/a	chr11:10772842-10772851
7	UBTF	chr11:10771971-10773338	K562	blood:	n/a	n/a
8	CREB1	chr11:10772204-10773249	GM12878	blood:	n/a	n/a
9	CEBPB	chr11:10772240-10772715	A549	lung:	n/a	n/a
10	PML	chr11:10772244-10773291	K562	blood:	n/a	n/a
11	CEBPB	chr11:10772084-10772893	HepG2	liver:	n/a	n/a
12	HCFC1	chr11:10772074-10773622	Hela-S3	cervix:	n/a	n/a
13	CEBPB	chr11:10772188-10772884	MCF-7	breast:	n/a	n/a
14	POLR2A	chr11:10772200-10773166	HL-60	blood:	n/a	n/a
15	CEBPB	chr11:10772181-10772777	K562	blood:	n/a	n/a
16	GABPA	chr11:10772178-10773252	SK-N-SH	brain:	n/a	chr11:10772518-10772527 chr11:10772750-10772759
17	POLR2A	chr11:10772243-10773179	H1-hESC	embryonic stem cell:	n/a	n/a
18	REST	chr11:10772248-10773175	A549	lung:	n/a	chr11:10772517-10772530
19	POLR2A	chr11:10772236-10773069	K562	blood:	n/a	n/a
20	CEBPB	chr11:10772238-10772791	IMR90	lung:	n/a	n/a
21	POLR2A	chr11:10772202-10773113	U87	brain:	n/a	n/a
22	EP300	chr11:10772059-10772973	K562	blood:	n/a	chr11:10772831-10772847 chr11:10772834-10772850 chr11:10772763-10772770 chr11:10772910-10772926 chr11:10772835-10772851
23	POLR2A	chr11:10772209-10773361	H1-neurons	neurons:	n/a	n/a
24	POLR2A	chr11:10772227-10773108	HCT-116	colon:	n/a	n/a
25	ARID3A	chr11:10772243-10773085	HepG2	liver:	n/a	n/a
26	POLR2A	chr11:10772225-10773503	K562	blood:	n/a	n/a
27	CREB1	chr11:10772190-10773195	K562	blood:	n/a	n/a
28	TCF12	chr11:10772122-10773198	A549	lung:	n/a	n/a
29	POLR2A	chr11:10772146-10773140	PANC-1	pancreas:	n/a	n/a
30	POLR2A	chr11:10772211-10773390	SK-N-MC	brain:	n/a	n/a
31	CEBPB	chr11:10772187-10772991	ECC-1	luminal epithelium:	n/a	n/a
32	SP1	chr11:10772171-10773039	H1-hESC	embryonic stem cell:	n/a	chr11:10772517-10772531 chr11:10772749-10772761 chr11:10772517-10772527 chr11:10772517-10772526 chr11:10772749-10772761 chr11:10772750-10772759 chr11:10772746-10772760 chr11:10772516-10772528 chr11:10772751-10772760 chr11:10772750-10772760 chr11:10772750-10772760 chr11:10772516-10772528 chr11:10772518-10772527 chr11:10772517-10772527 chr11:10772751-10772760
33	RCOR1	chr11:10772067-10773674	K562	blood:	n/a	n/a
34	ZEB1	chr11:10772169-10773230	HepG2	liver:	n/a	n/a
35	POLR2A	chr11:10772133-10773492	HUVEC	blood vessel:	n/a	n/a
36	POLR2A	chr11:10772224-10773526	GM12891	blood:	n/a	n/a
37	POLR2A	chr11:10772192-10773113	PFSK-1	brain:	n/a	n/a
38	JUN	chr11:10772203-10773240	K562	blood:	n/a	chr11:10772842-10772851
39	CEBPB	chr11:10772235-10772756	H1-hESC	embryonic stem cell:	n/a	n/a
40	MAX	chr11:10772208-10773202	HCT-116	colon:	n/a	chr11:10772517-10772527
41	POLR2A	chr11:10772116-10773291	PFSK-1	brain:	n/a	n/a
42	POLR2A	chr11:10772131-10773188	U87	brain:	n/a	n/a
43	GTF3C2	chr11:10771868-10772949	K562	blood:	n/a	n/a
44	MAX	chr11:10772217-10773165	HepG2	liver:	n/a	chr11:10772517-10772527
45	MAX	chr11:10772235-10773046	ECC-1	luminal epithelium:	n/a	chr11:10772517-10772527
46	MXI1	chr11:10771780-10774534	SK-N-SH	brain:	n/a	n/a
47	CEBPB	chr11:10772189-10772629	ECC-1	luminal epithelium:	n/a	n/a
48	GABPA	chr11:10772232-10773402	A549	lung:	n/a	chr11:10772518-10772527 chr11:10772750-10772759
49	CEBPB	chr11:10772227-10772752	K562	blood:	n/a	n/a
50	SP1	chr11:10772185-10773124	A549	lung:	n/a	chr11:10772517-10772531 chr11:10772749-10772761 chr11:10772517-10772527 chr11:10772517-10772526 chr11:10772749-10772761 chr11:10772750-10772759 chr11:10772746-10772760 chr11:10772516-10772528 chr11:10772751-10772760 chr11:10772750-10772760 chr11:10772750-10772760 chr11:10772516-10772528 chr11:10772518-10772527 chr11:10772517-10772527 chr11:10772751-10772760

No.	Distal block	Cell Line	Cell type
1	chr11:10772217..10772869-chr3:172468538..172469075,2	Hela-S3	cervix:
2	chr11:10771525..10774382-chr11:10828154..10830807,2	MCF-7	breast:
3	chr11:10769628..10775126-chr11:10825415..10832130,14	K562	blood:
4	chr11:10770139..10775230-chr11:10827183..10832173,6	K562	blood:

Variant related genes	Relation type
CTR9	TF binding region
ENSG00000114346	Chromatin interaction
ENSG00000246308	Chromatin interaction
ENSG00000110321	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11821886	1.00[AMR][1000 genomes]
rs11822861	1.00[AMR][1000 genomes]
rs11823290	1.00[AMR][1000 genomes]
rs2232912	1.00[AMR][1000 genomes]
rs55730838	1.00[AMR][1000 genomes]
rs56009251	1.00[AMR][1000 genomes]
rs56161511	1.00[AMR][1000 genomes]
rs57991096	1.00[AMR][1000 genomes]
rs58056814	1.00[AMR][1000 genomes]
rs58366863	1.00[AMR][1000 genomes]
rs58432384	1.00[AMR][1000 genomes]
rs58560142	1.00[AMR][1000 genomes]
rs59239356	1.00[AMR][1000 genomes]
rs59433293	1.00[AMR][1000 genomes]
rs61997166	1.00[AMR][1000 genomes]
rs73419666	1.00[AMR][1000 genomes]
rs73419669	1.00[AMR][1000 genomes]
rs73419672	1.00[AMR][1000 genomes]
rs73419674	1.00[AMR][1000 genomes]
rs73419676	1.00[AMR][1000 genomes]
rs73419678	1.00[AMR][1000 genomes]
rs73419688	1.00[AMR][1000 genomes]
rs73419698	1.00[AMR][1000 genomes]
rs73419699	1.00[AMR][1000 genomes]
rs73419702	1.00[AMR][1000 genomes]
rs73421505	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1037639	chr11:10737790-10871809	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv1040606	chr11:10763753-10995698	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10771600-10773200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:10771600-10774600	Active TSS	K562	blood
3	chr11:10771800-10772400	Flanking Active TSS	Dnd41	blood
4	chr11:10771800-10772600	Active TSS	Brain Germinal Matrix	brain
5	chr11:10771800-10773200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:10771800-10773400	Active TSS	Cortex derived primary cultured neurospheres	brain
7	chr11:10771800-10773400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:10771800-10773400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:10771800-10773400	Active TSS	HUVEC	blood vessel
10	chr11:10771800-10773600	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr11:10771800-10773600	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr11:10771800-10773600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:10771800-10773600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:10771800-10773600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:10771800-10773600	Active TSS	Fetal Muscle Leg	muscle
16	chr11:10771800-10773600	Active TSS	HSMM	muscle
17	chr11:10771800-10773800	Active TSS	H1 Cell Line	embryonic stem cell
18	chr11:10771800-10773800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:10771800-10773800	Active TSS	Muscle Satellite Cultured Cells	--
20	chr11:10771800-10773800	Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr11:10771800-10774000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:10771800-10774000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:10771800-10774000	Active TSS	Fetal Muscle Trunk	muscle
24	chr11:10771800-10774000	Active TSS	Right Atrium	heart
25	chr11:10771800-10774000	Active TSS	GM12878-XiMat	blood
26	chr11:10771800-10774000	Active TSS	NHEK	skin
27	chr11:10771800-10774200	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr11:10771800-10774200	Active TSS	HUES64 Cell Line	embryonic stem cell
29	chr11:10771800-10774200	Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr11:10771800-10774200	Active TSS	Fetal Brain Female	brain
31	chr11:10771800-10774400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:10771800-10774400	Active TSS	Fetal Intestine Small	intestine
33	chr11:10772000-10772400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr11:10772000-10772400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr11:10772000-10772400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
36	chr11:10772000-10772400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
37	chr11:10772000-10772400	Flanking Active TSS	Placenta	Placenta
38	chr11:10772000-10772400	Flanking Active TSS	Fetal Thymus	thymus
39	chr11:10772000-10772400	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chr11:10772000-10772600	Flanking Active TSS	Primary B cells from cord blood	blood
41	chr11:10772000-10772600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
42	chr11:10772000-10772600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:10772000-10772600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:10772000-10773000	Active TSS	Primary hematopoietic stem cells	blood
45	chr11:10772000-10773000	Active TSS	Adipose Nuclei	Adipose
46	chr11:10772000-10773000	Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr11:10772000-10773000	Active TSS	HepG2	liver
48	chr11:10772000-10773200	Active TSS	Monocytes-CD14+_RO01746	blood
49	chr11:10772000-10773400	Active TSS	Brain Angular Gyrus	brain
50	chr11:10772000-10773400	Active TSS	Rectal Smooth Muscle	rectum

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