Variant report

Variant	rs73421505
Chromosome Location	chr11:10915803-10915804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:10906467..10909703-chr11:10911774..10915883,4	K562	blood:
2	chr11:10915504..10918548-chr11:10920897..10924348,4	MCF-7	breast:
3	chr11:10899099..10901877-chr11:10914806..10917903,3	K562	blood:
4	chr11:10828628..10831380-chr11:10914746..10918112,3	K562	blood:
5	chr11:10826424..10832562-chr11:10915178..10926428,37	K562	blood:
6	chr11:10914477..10916989-chr11:10928211..10930711,3	K562	blood:
7	chr11:10913203..10916284-chr11:10916634..10919208,3	K562	blood:
8	chr11:10913680..10917054-chr11:10921039..10922872,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000246308	Chromatin interaction
ENSG00000110321	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11042942	1.00[EUR][1000 genomes]
rs11821886	1.00[AMR][1000 genomes]
rs11822861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11823290	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11827592	1.00[AMR][1000 genomes]
rs2232912	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56161511	1.00[AMR][1000 genomes]
rs57991096	1.00[AMR][1000 genomes]
rs58366863	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58432384	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58560142	1.00[AMR][1000 genomes]
rs59239356	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59882147	1.00[EUR][1000 genomes]
rs60370256	1.00[EUR][1000 genomes]
rs61997166	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419666	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419669	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419672	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73419674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419676	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419678	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419688	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419698	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419699	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419702	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421506	1.00[EUR][1000 genomes]
rs73421514	1.00[EUR][1000 genomes]
rs73421517	1.00[EUR][1000 genomes]
rs73421520	1.00[EUR][1000 genomes]
rs73421534	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040606	chr11:10763753-10995698	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
2	nsv1038686	chr11:10903482-11269086	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10898000-10917800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:10901600-10920800	Weak transcription	Pancreas	Pancrea
3	chr11:10906200-10919600	Weak transcription	NHEK	skin
4	chr11:10906400-10917800	Weak transcription	Esophagus	oesophagus
5	chr11:10914000-10916200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr11:10914000-10917200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr11:10914200-10917000	Enhancers	Fetal Intestine Large	intestine
8	chr11:10914200-10920000	Weak transcription	Gastric	stomach
9	chr11:10914400-10919000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr11:10914400-10921200	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:10914800-10916200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:10914800-10916200	Enhancers	Hela-S3	cervix
13	chr11:10914800-10916400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr11:10914800-10917000	Enhancers	Fetal Heart	heart
15	chr11:10914800-10917000	Enhancers	Fetal Intestine Small	intestine
16	chr11:10914800-10917000	Enhancers	NHDF-Ad	bronchial
17	chr11:10914800-10918200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:10914800-10919800	Weak transcription	Right Ventricle	heart
19	chr11:10915000-10916000	Enhancers	Rectal Smooth Muscle	rectum
20	chr11:10915000-10916000	Flanking Active TSS	A549	lung
21	chr11:10915000-10916000	Enhancers	Osteobl	bone
22	chr11:10915000-10916200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:10915000-10916200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:10915000-10916200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr11:10915000-10916200	Enhancers	Right Atrium	heart
26	chr11:10915000-10916600	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr11:10915000-10916600	Enhancers	Fetal Lung	lung
28	chr11:10915000-10917000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:10915000-10917000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:10915000-10917400	Enhancers	NHLF	lung
31	chr11:10915400-10916000	Enhancers	NH-A	brain
32	chr11:10915400-10916400	Enhancers	Stomach Smooth Muscle	stomach
33	chr11:10915400-10916600	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr11:10915400-10917400	Enhancers	K562	blood
35	chr11:10915400-10919600	Weak transcription	HMEC	breast
36	chr11:10915400-10920400	Enhancers	Psoas Muscle	Psoas
37	chr11:10915600-10916200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:10915600-10916200	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr11:10915600-10916600	Enhancers	Left Ventricle	heart
40	chr11:10915600-10919000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:10915800-10916400	Enhancers	Small Intestine	intestine
42	chr11:10915800-10919600	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr11:10915800-10919800	Weak transcription	HSMMtube	muscle
44	chr11:10915800-10920200	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links