Variant report

Variant	rs73419666
Chromosome Location	chr11:10880646-10880647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:107)
CpG islands
(count:61)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:107 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:10878541-10880785	H1-neurons	neurons:	n/a	n/a
2	MXI1	chr11:10878770-10880654	Hela-S3	cervix:	n/a	n/a
3	CHD2	chr11:10878928-10880663	GM12878	blood:	n/a	n/a
4	USF2	chr11:10880495-10880705	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr11:10878385-10880725	GM19099	blood:	n/a	n/a
6	POLR2A	chr11:10878578-10880672	GM12892	blood:	n/a	n/a
7	POLR2A	chr11:10878698-10880655	NB4	blood:	n/a	n/a
8	FOXM1	chr11:10880291-10880738	GM12878	blood:	n/a	n/a
9	GATA1	chr11:10878731-10880676	PBDE	blood:	n/a	chr11:10879725-10879735 chr11:10878920-10878928
10	TBP	chr11:10878399-10880694	K562	blood:	n/a	n/a
11	POLR2A	chr11:10878607-10880819	HepG2	liver:	n/a	n/a
12	YY1	chr11:10878767-10880701	SK-N-SH	brain:	n/a	chr11:10879332-10879340 chr11:10879385-10879394 chr11:10879331-10879353 chr11:10879331-10879341 chr11:10879457-10879468 chr11:10879285-10879296 chr11:10879578-10879589
13	CREB1	chr11:10878822-10880684	GM12878	blood:	n/a	n/a
14	MYC	chr11:10878649-10880659	K562	blood:	n/a	n/a
15	POLR2A	chr11:10878550-10880680	K562	blood:	n/a	n/a
16	POLR2A	chr11:10878470-10880793	Hela-S3	cervix:	n/a	n/a
17	ARID3A	chr11:10879338-10880891	HepG2	liver:	n/a	n/a
18	POLR2A	chr11:10877918-10880694	GM12878	blood:	n/a	n/a
19	TEAD4	chr11:10878229-10880833	K562	blood:	n/a	n/a
20	POLR2A	chr11:10878588-10880672	Raji	blood:	n/a	n/a
21	CHD1	chr11:10877616-10880962	IMR90	lung:	n/a	n/a
22	POLR2A	chr11:10877502-10882019	PANC-1	pancreas:	n/a	n/a
23	POLR2A	chr11:10877902-10880968	K562	blood:	n/a	n/a
24	BRCA1	chr11:10878671-10880974	Hela-S3	cervix:	n/a	n/a
25	POLR2A	chr11:10878554-10880671	Hela-S3	cervix:	n/a	n/a
26	TAF1	chr11:10878659-10880672	A549	lung:	n/a	n/a
27	MAX	chr11:10878775-10880684	NB4	blood:	n/a	n/a
28	CREB1	chr11:10878757-10880747	HepG2	liver:	n/a	n/a
29	PML	chr11:10878185-10880741	GM12878	blood:	n/a	n/a
30	ESRRA	chr11:10878332-10881141	GM12878	blood:	n/a	n/a
31	POLR2A	chr11:10878450-10880766	GM12892	blood:	n/a	n/a
32	MAX	chr11:10879040-10880846	SK-N-SH	brain:	n/a	n/a
33	MYC	chr11:10880469-10880669	MCF10A-Er-Src	breast:	n/a	n/a
34	BACH1	chr11:10879044-10880682	H1-hESC	embryonic stem cell:	n/a	n/a
35	HA-E2F1	chr11:10878658-10880714	MCF-7	breast:	n/a	chr11:10879386-10879396 chr11:10880010-10880021
36	SMARCB1	chr11:10878616-10880683	Hela-S3	cervix:	n/a	n/a
37	RFX5	chr11:10878543-10880807	Hela-S3	cervix:	n/a	n/a
38	FOSL2	chr11:10878673-10880885	A549	lung:	n/a	chr11:10879712-10879721
39	RUNX3	chr11:10878559-10880732	GM12878	blood:	n/a	chr11:10879576-10879593
40	STAT3	chr11:10880604-10880717	MCF10A-Er-Src	breast:	n/a	n/a
41	POLR2A	chr11:10878590-10880658	HL-60	blood:	n/a	n/a
42	ARID3A	chr11:10880436-10880967	K562	blood:	n/a	n/a
43	GTF2F1	chr11:10878379-10880737	Hela-S3	cervix:	n/a	n/a
44	YY1	chr11:10878606-10880704	SK-N-SH	brain:	n/a	chr11:10879332-10879340 chr11:10879385-10879394 chr11:10879331-10879353 chr11:10879331-10879341 chr11:10879457-10879468 chr11:10879285-10879296 chr11:10879578-10879589
45	POLR2A	chr11:10878283-10880835	PBDE	blood:	n/a	n/a
46	SMARCC1	chr11:10878378-10880845	Hela-S3	cervix:	n/a	n/a
47	TCF12	chr11:10878348-10880883	A549	lung:	n/a	n/a
48	MXI1	chr11:10879068-10880794	GM12878	blood:	n/a	n/a
49	TCF12	chr11:10878859-10880729	ECC-1	luminal epithelium:	n/a	n/a
50	KAP1	chr11:10878723-10880713	HEK293	kidney:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:10880635-10880685	HRCEpiC	kidney:	n/a
2	chr11:10880635-10880685	A549	lung:	n/a
3	chr11:10880635-10880685	AG04449	skin:	fetal
4	chr11:10880635-10880685	SKMC	muscle:	n/a
5	chr11:10880635-10880685	GM12878	blood:	n/a
6	chr11:10880635-10880685	HAEpiC	amniotic membrane:	n/a
7	chr11:10880635-10880685	SK-N-SH_RA	brain:	n/a
8	chr11:10880635-10880685	NHDF-neo	bronchial:	n/a
9	chr11:10880635-10880685	NH-A	brain:	n/a
10	chr11:10880635-10880685	NHBE	bronchial:	n/a
11	chr11:10880635-10880685	AG09319	gingival:	n/a
12	chr11:10880635-10880685	HMEC	breast:	n/a
13	chr11:10880635-10880685	PrEC	prostate:	n/a
14	chr11:10880635-10880685	HRE	kidney:	n/a
15	chr11:10880635-10880685	AG04450	lung:	fetal
16	chr11:10880635-10880685	HCPEpiC	choroid plexus:	n/a
17	chr11:10880635-10880685	HL-60	blood:	n/a
18	chr11:10880635-10880685	ProgFib	skin:	n/a
19	chr11:10880635-10880685	PFSK-1	brain:	n/a
20	chr11:10880635-10880685	SK-N-MC	brain:	n/a
21	chr11:10880635-10880685	HCT-116	colon:	n/a
22	chr11:10880635-10880685	IMR90	lung:	fetal
23	chr11:10880635-10880685	AoSMC	blood vessel:	n/a
24	chr11:10880635-10880685	T-47D	breast:	n/a
25	chr11:10880635-10880685	HPAEpiC	pulmonary alveolar:	n/a
26	chr11:10880635-10880685	U87	brain:	n/a
27	chr11:10880635-10880685	NT2-D1	testis:	n/a
28	chr11:10880635-10880685	RPTEC	kidney:	n/a
29	chr11:10880635-10880685	GM19239	blood:	n/a
30	chr11:10880635-10880685	H1-hESC	embryonic stem cell:	embryo
31	chr11:10880635-10880685	ECC-1	luminal epithelium:	n/a
32	chr11:10880635-10880685	Jurkat	blood:	n/a
33	chr11:10880635-10880685	ovcar-3	ovarian:	n/a
34	chr11:10880635-10880685	BJ	skin:	n/a
35	chr11:10880635-10880685	HRPEpiC	eye:	n/a
36	chr11:10880635-10880685	Hepatocyte	liver:	n/a
37	chr11:10880635-10880685	HEEpiC	esophagus:	n/a
38	chr11:10880635-10880685	AG09309	skin:	n/a
39	chr11:10880635-10880685	MCF10A-Er-Src	breast:	n/a
40	chr11:10880635-10880685	PANC-1	pancreas:	n/a
41	chr11:10880635-10880685	LNCaP	prostate:	n/a
42	chr11:10880635-10880685	HCF	heart:	n/a
43	chr11:10880635-10880685	HepG2	liver:	n/a
44	chr11:10880635-10880685	Caco-2	colon:	n/a
45	chr11:10880635-10880685	Hela-S3	cervix:	n/a
46	chr11:10880635-10880685	HNPCEpiC	eye:	n/a
47	chr11:10880635-10880685	K562	blood:	n/a
48	chr11:10880635-10880685	SAEC	small airway:	n/a
49	chr11:10880635-10880685	NB4	blood:	n/a
50	chr11:10880635-10880685	HUVEC	blood vessel:	n/a

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:10877728..10881491-chr11:10917238..10922801,13	MCF-7	breast:
2	chr11:10880333..10880919-chr19:18111591..18112259,2	Hela-S3	cervix:
3	chr11:10875813..10884237-chr11:10918851..10925690,14	K562	blood:
4	chr11:10880578..10884141-chr11:10920244..10923137,3	K562	blood:
5	chr11:10826628..10833192-chr11:10862494..10882277,65	MCF-7	breast:
6	chr11:10827202..10834699-chr11:10873450..10884211,37	MCF-7	breast:
7	chr11:10821010..10837911-chr11:10870747..10882644,62	K562	blood:
8	chr11:10821312..10832598-chr11:10875146..10882197,42	K562	blood:
9	chr11:10878419..10881126-chr11:11862004..11864876,2	K562	blood:
10	chr11:10822401..10824096-chr11:10878190..10881156,2	MCF-7	breast:

No data

Variant related genes	Relation type
ZBED5	TF binding region
ZBED5	CpG island
ENSG00000170242	Chromatin interaction
ENSG00000110321	Chromatin interaction
ENSG00000246308	Chromatin interaction
ENSG00000105643	Chromatin interaction
ENSG00000250041	Chromatin interaction
ENSG00000238622	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11042942	1.00[EUR][1000 genomes]
rs11821886	1.00[AMR][1000 genomes]
rs11822861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11823290	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11827592	1.00[AMR][1000 genomes]
rs2232912	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55730838	1.00[AMR][1000 genomes]
rs56009251	1.00[AMR][1000 genomes]
rs56161511	1.00[AMR][1000 genomes]
rs57991096	1.00[AMR][1000 genomes]
rs58366863	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58432384	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58560142	1.00[AMR][1000 genomes]
rs59239356	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59433293	1.00[AMR][1000 genomes]
rs59882147	1.00[EUR][1000 genomes]
rs60370256	1.00[EUR][1000 genomes]
rs61997166	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73419674	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419678	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419688	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419698	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419699	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419702	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421505	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421506	1.00[EUR][1000 genomes]
rs73421514	1.00[EUR][1000 genomes]
rs73421517	1.00[EUR][1000 genomes]
rs73421520	1.00[EUR][1000 genomes]
rs73421534	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040606	chr11:10763753-10995698	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10876800-10880800	Active TSS	Fetal Brain Female	brain
2	chr11:10877200-10881200	Active TSS	GM12878-XiMat	blood
3	chr11:10877600-10881000	Active TSS	Fetal Muscle Leg	muscle
4	chr11:10877600-10881200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:10877600-10881200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:10877600-10881200	Active TSS	Psoas Muscle	Psoas
7	chr11:10877600-10881200	Active TSS	NHLF	lung
8	chr11:10877800-10881000	Active TSS	HSMMtube	muscle
9	chr11:10877800-10881200	Active TSS	H1 Cell Line	embryonic stem cell
10	chr11:10877800-10881200	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr11:10877800-10881400	Active TSS	Stomach Smooth Muscle	stomach
12	chr11:10877800-10881400	Active TSS	K562	blood
13	chr11:10877800-10881600	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr11:10878000-10880800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:10878000-10880800	Active TSS	Right Ventricle	heart
16	chr11:10878000-10881000	Active TSS	H9 Cell Line	embryonic stem cell
17	chr11:10878000-10881000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:10878000-10881000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:10878000-10881000	Active TSS	Fetal Stomach	stomach
20	chr11:10878000-10881000	Active TSS	Fetal Thymus	thymus
21	chr11:10878000-10881000	Active TSS	HSMM	muscle
22	chr11:10878000-10881200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:10878000-10881200	Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr11:10878000-10881200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:10878000-10881200	Active TSS	Aorta	Aorta
26	chr11:10878000-10881400	Active TSS	NHDF-Ad	bronchial
27	chr11:10878000-10881600	Active TSS	Muscle Satellite Cultured Cells	--
28	chr11:10878000-10881600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:10878200-10880800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr11:10878200-10880800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr11:10878200-10880800	Active TSS	Colonic Mucosa	Colon
32	chr11:10878200-10880800	Active TSS	Fetal Muscle Trunk	muscle
33	chr11:10878200-10880800	Active TSS	Left Ventricle	heart
34	chr11:10878200-10880800	Active TSS	Ovary	ovary
35	chr11:10878200-10880800	Active TSS	Sigmoid Colon	Sigmoid Colon
36	chr11:10878200-10881000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:10878200-10881000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:10878200-10881000	Active TSS	Colon Smooth Muscle	Colon
39	chr11:10878200-10881000	Active TSS	Fetal Intestine Large	intestine
40	chr11:10878200-10881000	Active TSS	Fetal Intestine Small	intestine
41	chr11:10878200-10881000	Active TSS	Placenta Amnion	Placenta Amnion
42	chr11:10878200-10881200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:10878200-10881400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:10878200-10881400	Active TSS	Fetal Lung	lung
45	chr11:10878400-10880800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
46	chr11:10878400-10880800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:10878400-10880800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr11:10878400-10880800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
49	chr11:10878400-10880800	Active TSS	Esophagus	oesophagus
50	chr11:10878400-10880800	Active TSS	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links