Variant report

Variant	rs11042942
Chromosome Location	chr11:10757859-10757860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:10645536..10647018-chr11:10756988..10757969,13	K562	blood:
2	chr11:10434756..10435452-chr11:10756898..10757941,4	MCF-7	breast:
3	chr11:10535492..10536882-chr11:10757031..10758034,5	K562	blood:
4	chr11:10645775..10647638-chr11:10757654..10759171,2	K562	blood:
5	chr11:10645674..10646632-chr11:10756942..10757922,7	MCF-7	breast:
6	chr11:10756194..10759055-chr11:10771623..10774261,2	K562	blood:
7	chr11:10585636..10586718-chr11:10756889..10757976,5	MCF-7	breast:
8	chr11:10678917..10680760-chr11:10757378..10759987,2	K562	blood:
9	chr11:10675809..10676339-chr11:10757361..10757900,2	MCF-7	breast:
10	chr11:10427272..10428747-chr11:10756868..10757977,15	K562	blood:
11	chr11:10726070..10727726-chr11:10756782..10759046,2	K562	blood:
12	chr11:10756121..10759478-chr11:10761013..10764437,4	K562	blood:
13	chr11:10429637..10431690-chr11:10756328..10758513,2	MCF-7	breast:
14	chr11:10756589..10759055-chr11:10771202..10773123,2	K562	blood:
15	chr11:10755622..10759318-chr11:10762937..10767532,4	K562	blood:
16	chr11:10756270..10758622-chr11:10829204..10831091,2	K562	blood:
17	chr11:10645710..10647291-chr11:10756891..10757870,13	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000246308	Chromatin interaction
ENSG00000133805	Chromatin interaction
ENSG00000198730	Chromatin interaction
ENSG00000110321	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11042941	1.00[AMR][1000 genomes]
rs11822861	1.00[EUR][1000 genomes]
rs11823290	1.00[EUR][1000 genomes]
rs2232912	1.00[EUR][1000 genomes]
rs58366863	1.00[EUR][1000 genomes]
rs58432384	1.00[EUR][1000 genomes]
rs59239356	1.00[EUR][1000 genomes]
rs59882147	1.00[EUR][1000 genomes]
rs60370256	1.00[EUR][1000 genomes]
rs61997166	1.00[EUR][1000 genomes]
rs73419666	1.00[EUR][1000 genomes]
rs73419669	1.00[EUR][1000 genomes]
rs73419674	1.00[EUR][1000 genomes]
rs73419676	1.00[EUR][1000 genomes]
rs73419678	1.00[EUR][1000 genomes]
rs73419688	1.00[EUR][1000 genomes]
rs73419698	1.00[EUR][1000 genomes]
rs73419699	1.00[EUR][1000 genomes]
rs73419702	1.00[EUR][1000 genomes]
rs73421505	1.00[EUR][1000 genomes]
rs73421506	1.00[EUR][1000 genomes]
rs73421514	1.00[EUR][1000 genomes]
rs73421517	1.00[EUR][1000 genomes]
rs73421520	1.00[EUR][1000 genomes]
rs73421534	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1037639	chr11:10737790-10871809	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv38696	chr11:10757081-10762532	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10754200-10759600	Weak transcription	Right Atrium	heart
2	chr11:10755600-10758000	Enhancers	Fetal Stomach	stomach
3	chr11:10756200-10758200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:10756200-10758200	Enhancers	Esophagus	oesophagus
5	chr11:10756200-10758200	Enhancers	Ovary	ovary
6	chr11:10756400-10758000	Weak transcription	Lung	lung
7	chr11:10756600-10772000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:10756800-10758200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:10756800-10758200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr11:10757000-10758000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr11:10757000-10758000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr11:10757000-10758000	Flanking Active TSS	Colon Smooth Muscle	Colon
13	chr11:10757000-10758000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr11:10757000-10758000	Flanking Active TSS	Stomach Smooth Muscle	stomach
15	chr11:10757000-10758200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:10757000-10758200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:10757000-10758200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:10757000-10758200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:10757000-10758200	Enhancers	Fetal Intestine Large	intestine
20	chr11:10757000-10758200	Enhancers	Placenta Amnion	Placenta Amnion
21	chr11:10757000-10758200	Flanking Active TSS	Hela-S3	cervix
22	chr11:10757000-10758200	Enhancers	HSMMtube	muscle
23	chr11:10757000-10758200	Flanking Active TSS	NHEK	skin
24	chr11:10757000-10758200	Flanking Active TSS	Osteobl	bone
25	chr11:10757200-10758000	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr11:10757200-10758000	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr11:10757200-10758000	Active TSS	NHLF	lung
28	chr11:10757200-10758200	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr11:10757200-10758200	Flanking Active TSS	Stomach Mucosa	stomach
30	chr11:10757200-10758200	Flanking Active TSS	HMEC	breast
31	chr11:10757400-10758000	Enhancers	Primary B cells from peripheral blood	blood
32	chr11:10757400-10758000	Enhancers	Brain Hippocampus Middle	brain
33	chr11:10757400-10758200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr11:10757400-10758200	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr11:10757400-10758200	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr11:10757400-10758200	Enhancers	K562	blood
37	chr11:10757400-10758600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:10757400-10763600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:10757600-10758000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:10757600-10758000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:10757600-10758000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:10757600-10758000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr11:10757600-10758000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:10757600-10758000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:10757600-10758000	Enhancers	Brain Cingulate Gyrus	brain
46	chr11:10757600-10758000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
47	chr11:10757600-10758000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr11:10757600-10758000	Weak transcription	Fetal Intestine Small	intestine
49	chr11:10757600-10758000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
50	chr11:10757600-10758000	Enhancers	Dnd41	blood

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