Variant report

Variant	rs11823290
Chromosome Location	chr11:10930873-10930874
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:10919982..10924359-chr11:10924472..10931568,10	K562	blood:
2	chr11:10823811..10832245-chr11:10927125..10937025,17	K562	blood:
3	chr11:10920861..10923309-chr11:10927374..10931390,3	MCF-7	breast:
4	chr11:10810798..10812911-chr11:10929789..10932632,2	MCF-7	breast:
5	chr11:10827907..10831876-chr11:10929061..10931027,4	K562	blood:
6	chr11:10920792..10922534-chr11:10928829..10931018,2	K562	blood:
7	chr11:10922771..10926245-chr11:10928200..10931811,4	K562	blood:
8	chr11:10929940..10933419-chr11:10938065..10941376,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CTR9-3	chr11:10928002-10932005	XLOC_009065

No data

Variant related genes	Relation type
ENSG00000246308	Chromatin interaction
ENSG00000250041	Chromatin interaction
ENSG00000110321	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11042942	1.00[EUR][1000 genomes]
rs11821886	1.00[AMR][1000 genomes]
rs11822861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11827592	1.00[AMR][1000 genomes]
rs2232912	1.00[ASW][hapmap];0.90[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56161511	1.00[AMR][1000 genomes]
rs57991096	1.00[AMR][1000 genomes]
rs58366863	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58432384	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59239356	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59882147	1.00[EUR][1000 genomes]
rs60370256	1.00[EUR][1000 genomes]
rs61997166	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419666	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419669	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419672	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73419674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419676	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419678	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419688	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419698	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419699	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419702	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421506	1.00[EUR][1000 genomes]
rs73421514	1.00[EUR][1000 genomes]
rs73421517	1.00[EUR][1000 genomes]
rs73421520	1.00[EUR][1000 genomes]
rs73421534	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040606	chr11:10763753-10995698	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
2	nsv1038686	chr11:10903482-11269086	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10921400-10933800	Weak transcription	Right Ventricle	heart
2	chr11:10922600-10934800	Weak transcription	Lung	lung
3	chr11:10924600-10931000	Weak transcription	Stomach Mucosa	stomach
4	chr11:10925200-10933200	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:10927600-10931400	Enhancers	NHLF	lung
6	chr11:10927600-10931800	Enhancers	NHDF-Ad	bronchial
7	chr11:10927800-10931400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:10927800-10931800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:10927800-10931800	Enhancers	HSMM	muscle
10	chr11:10928000-10931200	Enhancers	HSMMtube	muscle
11	chr11:10928000-10931600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:10928000-10931600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr11:10928000-10931800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:10928000-10931800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:10928000-10931800	Enhancers	HMEC	breast
16	chr11:10928200-10931400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr11:10928400-10931000	Weak transcription	Left Ventricle	heart
18	chr11:10928400-10932400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:10928600-10932600	Weak transcription	HUVEC	blood vessel
20	chr11:10928600-10933000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:10928800-10933000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:10929400-10931000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr11:10929400-10931400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:10929400-10931400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:10929400-10931400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:10929400-10931400	Enhancers	A549	lung
27	chr11:10929400-10931600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:10929400-10931600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:10929400-10931600	Enhancers	Hela-S3	cervix
30	chr11:10929400-10931600	Enhancers	NHEK	skin
31	chr11:10929400-10931800	Enhancers	Placenta Amnion	Placenta Amnion
32	chr11:10929600-10931000	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr11:10929600-10931000	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr11:10929600-10931000	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr11:10929600-10931000	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr11:10929600-10931400	Enhancers	Aorta	Aorta
37	chr11:10930000-10931000	Flanking Active TSS	NH-A	brain
38	chr11:10930000-10933000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr11:10930000-10933200	Weak transcription	Fetal Lung	lung
40	chr11:10930000-10933600	Weak transcription	Fetal Muscle Leg	muscle
41	chr11:10930000-10934800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:10930200-10931000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:10930200-10931200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr11:10930200-10931200	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr11:10930200-10932600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr11:10930200-10933200	Weak transcription	Adipose Nuclei	Adipose
47	chr11:10930600-10931000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr11:10930600-10931000	Enhancers	K562	blood
49	chr11:10930600-10931200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr11:10930600-10931400	Enhancers	Fetal Heart	heart

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