Variant report

Variant	rs73421534
Chromosome Location	chr11:10955010-10955011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:10868852..10871509-chr11:10953831..10955386,2	K562	blood:
2	chr11:10954563..10957432-chr11:11043750..11046087,2	MCF-7	breast:
3	chr11:10951466..10954101-chr11:10954499..10956363,2	MCF-7	breast:
4	chr11:10827416..10832162-chr11:10952102..10957167,11	K562	blood:
5	chr11:10954797..10955899-chr11:11043456..11044554,6	MCF-7	breast:
6	chr11:10946875..10950936-chr11:10953857..10957313,4	K562	blood:
7	chr11:10954131..10956528-chr11:10959385..10961450,2	K562	blood:
8	chr11:10876932..10881635-chr11:10950756..10955353,6	MCF-7	breast:
9	chr11:10827421..10832148-chr11:10949062..10956588,10	K562	blood:
10	chr11:10876392..10881484-chr11:10951189..10956937,9	K562	blood:
11	chr11:10814251..10816203-chr11:10953436..10955122,2	K562	blood:
12	chr11:10828218..10832376-chr11:10950597..10955754,16	MCF-7	breast:
13	chr11:10919672..10923796-chr11:10953403..10957150,4	MCF-7	breast:
14	chr11:10946518..10949516-chr11:10953929..10956761,2	MCF-7	breast:
15	chr11:10814193..10815751-chr11:10953622..10955956,2	K562	blood:
16	chr11:10828043..10832978-chr11:10951135..10956120,13	MCF-7	breast:
17	chr11:10954643..10957871-chr11:10957997..10961645,3	K562	blood:
18	chr11:10806244..10808765-chr11:10954520..10957427,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CTR9-5	chr11:10954994-10955264	XLOC_009067
2	lnc-CTR9-5	chr11:10954994-10955245	NONHSAT018013

No data

Variant related genes	Relation type
ENSG00000247271	Chromatin interaction
ENSG00000236287	Chromatin interaction
ENSG00000246308	Chromatin interaction
ENSG00000250041	Chromatin interaction
ENSG00000110321	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11042942	1.00[EUR][1000 genomes]
rs11822861	1.00[EUR][1000 genomes]
rs11823290	1.00[EUR][1000 genomes]
rs2232912	1.00[EUR][1000 genomes]
rs58366863	1.00[EUR][1000 genomes]
rs58432384	1.00[EUR][1000 genomes]
rs59239356	1.00[EUR][1000 genomes]
rs59882147	1.00[EUR][1000 genomes]
rs60370256	1.00[EUR][1000 genomes]
rs61997166	1.00[EUR][1000 genomes]
rs73419666	1.00[EUR][1000 genomes]
rs73419669	1.00[EUR][1000 genomes]
rs73419674	1.00[EUR][1000 genomes]
rs73419676	1.00[EUR][1000 genomes]
rs73419678	1.00[EUR][1000 genomes]
rs73419688	1.00[EUR][1000 genomes]
rs73419698	1.00[EUR][1000 genomes]
rs73419699	1.00[EUR][1000 genomes]
rs73419702	1.00[EUR][1000 genomes]
rs73421505	1.00[EUR][1000 genomes]
rs73421506	1.00[EUR][1000 genomes]
rs73421514	1.00[EUR][1000 genomes]
rs73421517	1.00[EUR][1000 genomes]
rs73421520	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040606	chr11:10763753-10995698	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
2	nsv1038686	chr11:10903482-11269086	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10952200-10956200	Active TSS	NHLF	lung
2	chr11:10952800-10955600	Weak transcription	Spleen	Spleen
3	chr11:10953200-10955400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:10953600-10955400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:10953600-10955400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:10953600-10955400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:10953600-10955400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:10953600-10955400	Weak transcription	Brain Angular Gyrus	brain
9	chr11:10953600-10955400	Weak transcription	Brain Anterior Caudate	brain
10	chr11:10953600-10955400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:10953600-10955400	Weak transcription	Brain Substantia Nigra	brain
12	chr11:10953600-10955400	Enhancers	Fetal Heart	heart
13	chr11:10953600-10955400	Enhancers	Fetal Stomach	stomach
14	chr11:10953600-10955400	Weak transcription	Left Ventricle	heart
15	chr11:10953600-10955400	Weak transcription	Pancreas	Pancrea
16	chr11:10953600-10955400	Weak transcription	Psoas Muscle	Psoas
17	chr11:10953600-10955400	Weak transcription	Right Atrium	heart
18	chr11:10953600-10955400	Weak transcription	Right Ventricle	heart
19	chr11:10953600-10955400	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr11:10953600-10955400	Enhancers	HMEC	breast
21	chr11:10953600-10955400	Weak transcription	HSMMtube	muscle
22	chr11:10953600-10955600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:10953800-10955400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:10953800-10955400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:10954000-10955200	Weak transcription	Fetal Kidney	kidney
26	chr11:10954000-10955400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:10954000-10955400	Weak transcription	Adipose Nuclei	Adipose
28	chr11:10954000-10955400	Enhancers	Brain Germinal Matrix	brain
29	chr11:10954000-10955400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr11:10954000-10955400	Enhancers	Fetal Brain Female	brain
31	chr11:10954000-10955400	Enhancers	Fetal Muscle Leg	muscle
32	chr11:10954000-10955400	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr11:10954000-10955400	Weak transcription	HSMM	muscle
34	chr11:10954000-10955600	Weak transcription	Aorta	Aorta
35	chr11:10954000-10955600	Weak transcription	Ovary	ovary
36	chr11:10954000-10956400	Enhancers	Fetal Brain Male	brain
37	chr11:10954200-10955200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr11:10954200-10955200	Weak transcription	Stomach Mucosa	stomach
39	chr11:10954200-10955400	Enhancers	H1 Cell Line	embryonic stem cell
40	chr11:10954200-10955400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:10954200-10955400	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr11:10954200-10955400	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr11:10954200-10955400	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr11:10954200-10955400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr11:10954200-10955400	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr11:10954200-10955400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:10954200-10955400	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr11:10954200-10955400	Enhancers	Fetal Intestine Large	intestine
49	chr11:10954200-10955400	Enhancers	Fetal Intestine Small	intestine
50	chr11:10954200-10955400	Weak transcription	Fetal Muscle Trunk	muscle

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