Variant report

Variant	rs58124270
Chromosome Location	chr21:40040521-40040522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:40039125..40041659-chr21:40042209..40043754,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11911171	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12626880	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12627063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12627644	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16996685	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16996732	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2836600	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2836601	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2836605	1.00[EUR][1000 genomes]
rs2836606	1.00[EUR][1000 genomes]
rs2836609	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28723628	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28760544	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7276282	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73432980	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73446333	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73446339	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73446340	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73446346	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73446348	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73446356	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73446361	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73446368	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40039000-40040800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr21:40039000-40041000	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr21:40039200-40040800	Enhancers	Fetal Intestine Large	intestine
4	chr21:40039200-40040800	Enhancers	Fetal Intestine Small	intestine
5	chr21:40039400-40041600	Enhancers	Duodenum Mucosa	Duodenum
6	chr21:40039600-40040800	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr21:40039800-40040800	Enhancers	HepG2	liver
8	chr21:40039800-40041000	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr21:40040000-40071200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr21:40040200-40040800	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
11	chr21:40040400-40040800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr21:40040400-40040800	Enhancers	Colonic Mucosa	Colon
13	chr21:40040400-40041000	Enhancers	Small Intestine	intestine

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