Variant report

Variant	rs73446339
Chromosome Location	chr21:40027288-40027289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11911171	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12626880	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12627063	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16996685	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16996732	1.00[EUR][1000 genomes]
rs2836600	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836601	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2836605	1.00[EUR][1000 genomes]
rs2836606	1.00[EUR][1000 genomes]
rs2836609	1.00[EUR][1000 genomes]
rs28723628	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28760544	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58124270	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7276282	1.00[EUR][1000 genomes]
rs73432980	1.00[EUR][1000 genomes]
rs73446333	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73446340	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73446346	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73446348	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73446356	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73446361	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73446368	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058663	chr21:40009959-40031681	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1055287	chr21:40013735-40031681	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40024800-40027400	Weak transcription	Aorta	Aorta
2	chr21:40026000-40028000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr21:40027000-40027400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr21:40027000-40028600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr21:40027200-40028200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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