Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:40024195..40027388-chr21:40030048..40033604,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157554	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11911171	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12626880	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12627063	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16996732	1.00[EUR][1000 genomes]
rs2836595	0.83[ASW][hapmap]
rs2836597	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs2836600	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836601	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2836605	1.00[EUR][1000 genomes]
rs2836606	1.00[EUR][1000 genomes]
rs2836609	1.00[EUR][1000 genomes]
rs28723628	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28760544	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58124270	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7276282	1.00[EUR][1000 genomes]
rs73432980	1.00[EUR][1000 genomes]
rs73446333	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73446339	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73446340	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73446346	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73446348	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73446356	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73446361	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73446368	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065541	chr21:40009959-40024976	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1057719	chr21:40009959-40025433	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1058663	chr21:40009959-40031681	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1055287	chr21:40013735-40031681	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40016000-40027000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr21:40023800-40024800	Enhancers	Aorta	Aorta
3	chr21:40024000-40025400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast

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