Variant report

Variant	rs12627063
Chromosome Location	chr21:40041272-40041273
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:40039125..40041659-chr21:40042209..40043754,2	MCF-7	breast:
2	chr21:40040835..40041806-chr21:40083626..40084612,2	MCF-7	breast:
3	chr21:40040912..40041817-chr21:40507070..40508725,4	MCF-7	breast:
4	chr21:39985800..39986779-chr21:40040880..40041546,3	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11911171	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12626880	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12627644	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16996685	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16996732	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2836597	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2836600	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2836601	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2836605	1.00[EUR][1000 genomes]
rs2836606	1.00[EUR][1000 genomes]
rs2836609	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28723628	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28760544	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58124270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7276282	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73432980	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73446333	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73446339	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73446340	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73446346	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73446348	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73446356	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73446361	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73446368	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40039400-40041600	Enhancers	Duodenum Mucosa	Duodenum
2	chr21:40040000-40071200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr21:40040800-40042800	Weak transcription	Ovary	ovary
4	chr21:40040800-40043000	Weak transcription	Fetal Intestine Small	intestine

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