Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:40024195..40027388-chr21:40030048..40033604,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ETS2-6	chr21:40023301-40024477	NONHSAT082114

Variant related genes	Relation type
ENSG00000157554	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11088437	0.81[EUR][1000 genomes]
rs11701577	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11702165	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11911171	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs16996685	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs2212606	0.91[EUR][1000 genomes]
rs2836598	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2836600	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs2836601	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs2836602	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2836610	0.90[EUR][1000 genomes]
rs2836615	0.88[EUR][1000 genomes]
rs2836621	0.82[EUR][1000 genomes]
rs4143428	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4514962	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs456170	0.82[EUR][1000 genomes]
rs464980	0.83[EUR][1000 genomes]
rs55955614	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58120977	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61085980	0.96[EUR][1000 genomes]
rs62217513	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62217517	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62217518	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62217519	0.92[EUR][1000 genomes]
rs764482	0.87[CHB][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8130434	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8132069	0.86[EUR][1000 genomes]
rs991816	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065541	chr21:40009959-40024976	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1057719	chr21:40009959-40025433	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1058663	chr21:40009959-40031681	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1055287	chr21:40013735-40031681	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40016000-40027000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr21:40023800-40024800	Enhancers	Aorta	Aorta
3	chr21:40024000-40025400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast

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