Variant report

Variant	rs11702165
Chromosome Location	chr21:40035313-40035314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11088437	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11701577	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11701855	0.90[ASN][1000 genomes]
rs2212606	0.95[EUR][1000 genomes]
rs2836582	0.88[ASN][1000 genomes]
rs2836597	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2836598	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2836602	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2836610	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2836611	0.92[ASN][1000 genomes]
rs2836615	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2836621	0.84[EUR][1000 genomes]
rs4143428	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4514962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55955614	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58120977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61085980	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61189207	0.88[ASN][1000 genomes]
rs62217513	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62217517	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62217518	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62217519	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73902704	0.88[ASN][1000 genomes]
rs743444	0.90[ASN][1000 genomes]
rs764482	0.89[EUR][1000 genomes]
rs8128137	0.82[ASN][1000 genomes]
rs8130434	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8132069	0.88[EUR][1000 genomes]
rs9647181	0.82[ASN][1000 genomes]
rs991816	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40033800-40036200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr21:40033800-40036200	Weak transcription	Gastric	stomach
3	chr21:40034600-40036000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr21:40035000-40036800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr21:40035200-40035400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links