Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:40049094..40052988-chr21:40053100..40057080,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11088437	0.98[ASN][1000 genomes]
rs11701577	0.90[ASN][1000 genomes]
rs11701855	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11702165	0.90[ASN][1000 genomes]
rs2836582	0.86[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2836598	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2836602	0.94[ASN][1000 genomes]
rs2836610	0.96[ASN][1000 genomes]
rs2836611	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2836615	0.98[ASN][1000 genomes]
rs2836637	0.91[EUR][1000 genomes]
rs4143428	0.90[ASN][1000 genomes]
rs4514962	0.94[ASN][1000 genomes]
rs55955614	0.92[ASN][1000 genomes]
rs58120977	0.94[ASN][1000 genomes]
rs61189207	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62217513	0.90[ASN][1000 genomes]
rs62217517	0.90[ASN][1000 genomes]
rs62217518	0.90[ASN][1000 genomes]
rs62217519	0.90[ASN][1000 genomes]
rs73902704	0.89[ASN][1000 genomes]
rs8128137	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8130434	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9647181	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs743444	CLIC6	cis	cerebellum	SCAN
rs743444	RUNX1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40040000-40071200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr21:40054200-40059000	Weak transcription	Aorta	Aorta
3	chr21:40055000-40056800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr21:40055200-40056800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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