Variant report

Variant	rs2836610
Chromosome Location	chr21:40044502-40044503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11088437	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11701577	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11701855	0.96[ASN][1000 genomes]
rs11702165	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2212606	0.97[EUR][1000 genomes]
rs2836582	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2836597	0.90[EUR][1000 genomes]
rs2836598	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2836602	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2836611	0.98[ASN][1000 genomes]
rs2836615	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2836621	0.87[EUR][1000 genomes]
rs4143428	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4514962	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55955614	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58120977	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61085980	0.92[EUR][1000 genomes]
rs61189207	0.90[ASN][1000 genomes]
rs62217513	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62217517	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62217518	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62217519	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73902704	0.90[ASN][1000 genomes]
rs743444	0.96[ASN][1000 genomes]
rs764482	0.85[EUR][1000 genomes]
rs8128137	0.88[ASN][1000 genomes]
rs8130434	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8132069	0.83[EUR][1000 genomes]
rs9647181	0.88[ASN][1000 genomes]
rs991816	0.95[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2836610	SETD4	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40040000-40071200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr21:40041600-40045000	Enhancers	Fetal Brain Male	brain
3	chr21:40043400-40044600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr21:40043400-40044600	Enhancers	Fetal Lung	lung
5	chr21:40043400-40044600	Enhancers	Fetal Stomach	stomach
6	chr21:40043600-40044600	Enhancers	Brain Cingulate Gyrus	brain
7	chr21:40043600-40044600	Enhancers	Colon Smooth Muscle	Colon
8	chr21:40043600-40045000	Enhancers	Fetal Muscle Leg	muscle
9	chr21:40043800-40048200	Weak transcription	Aorta	Aorta
10	chr21:40044200-40044600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr21:40044400-40046800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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