Variant report

Variant	rs58120977
Chromosome Location	chr21:40037346-40037347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:40014305..40016339-chr21:40035627..40038289,2	MCF-7	breast:
2	chr21:40030626..40032570-chr21:40036833..40038338,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11088437	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11701577	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11701855	0.94[ASN][1000 genomes]
rs11702165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2212606	0.94[EUR][1000 genomes]
rs2836582	0.88[ASN][1000 genomes]
rs2836597	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2836598	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2836602	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836610	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2836611	0.96[ASN][1000 genomes]
rs2836615	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2836621	0.84[EUR][1000 genomes]
rs4143428	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4514962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55955614	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61085980	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61189207	0.88[ASN][1000 genomes]
rs62217513	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62217517	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62217518	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62217519	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73902704	0.88[ASN][1000 genomes]
rs743444	0.94[ASN][1000 genomes]
rs764482	0.89[EUR][1000 genomes]
rs8128137	0.86[ASN][1000 genomes]
rs8130434	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8132069	0.87[EUR][1000 genomes]
rs9647181	0.86[ASN][1000 genomes]
rs991816	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40036600-40037400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr21:40036600-40039600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr21:40037000-40039000	Weak transcription	Monocytes-CD14+_RO01746	blood

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