Variant report

Variant	rs4514962
Chromosome Location	chr21:40041753-40041754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:40040835..40041806-chr21:40083626..40084612,2	MCF-7	breast:
2	chr21:40040912..40041817-chr21:40507070..40508725,4	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11088437	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11701577	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11701855	0.94[ASN][1000 genomes]
rs11702165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2212606	0.95[EUR][1000 genomes]
rs2836582	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2836597	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2836598	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2836602	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836610	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2836611	0.96[ASN][1000 genomes]
rs2836615	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2836621	0.84[EUR][1000 genomes]
rs4143428	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55955614	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58120977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61085980	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61189207	0.88[ASN][1000 genomes]
rs62217513	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62217517	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62217518	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62217519	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73902704	0.88[ASN][1000 genomes]
rs743444	0.94[ASN][1000 genomes]
rs764482	0.89[EUR][1000 genomes]
rs8128137	0.86[ASN][1000 genomes]
rs8130434	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8132069	0.88[EUR][1000 genomes]
rs9647181	0.86[ASN][1000 genomes]
rs991816	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40040000-40071200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr21:40040800-40042800	Weak transcription	Ovary	ovary
3	chr21:40040800-40043000	Weak transcription	Fetal Intestine Small	intestine
4	chr21:40041600-40041800	Enhancers	Aorta	Aorta
5	chr21:40041600-40045000	Enhancers	Fetal Brain Male	brain

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