Variant report

Variant	rs58258245
Chromosome Location	chr14:71041621-71041622
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10129782	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10131716	0.86[ASN][1000 genomes]
rs10133963	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10135356	0.83[AMR][1000 genomes]
rs10141744	0.85[AMR][1000 genomes]
rs10143254	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10144535	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10144696	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10147143	0.86[ASN][1000 genomes]
rs10150160	0.84[ASN][1000 genomes]
rs10483832	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10873239	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1112478	0.87[AMR][1000 genomes]
rs12587666	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12587866	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12590117	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12590198	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12590217	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12590401	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12590610	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1538403	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17108197	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17108267	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17108276	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17108278	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17108280	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1953803	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1959477	0.86[AMR][1000 genomes]
rs2332431	0.86[ASN][1000 genomes]
rs28559756	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28612538	0.83[AMR][1000 genomes]
rs2877672	0.86[AMR][1000 genomes]
rs55965222	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56155089	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56322604	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56392092	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56687536	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56721095	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58919501	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59115232	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59475121	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59599422	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60370428	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60453577	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60555424	0.86[ASN][1000 genomes]
rs60848570	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60860517	0.83[AMR][1000 genomes]
rs60867605	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60870618	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7141056	0.84[ASN][1000 genomes]
rs7141713	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7141730	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7150354	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7154904	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7155088	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7155436	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7155617	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7155629	0.84[EUR][1000 genomes]
rs7156661	0.85[ASN][1000 genomes]
rs7157073	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7157455	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7157685	0.85[ASN][1000 genomes]
rs7158848	0.85[AMR][1000 genomes]
rs7359112	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8005893	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8016953	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8021911	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9323542	0.85[AMR][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71022800-71047000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr14:71023000-71045800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr14:71023200-71050400	Weak transcription	Gastric	stomach
4	chr14:71025400-71047600	Weak transcription	NH-A	brain
5	chr14:71026400-71047000	Weak transcription	Colon Smooth Muscle	Colon
6	chr14:71027400-71047200	Weak transcription	NHLF	lung
7	chr14:71028600-71047200	Weak transcription	Fetal Heart	heart
8	chr14:71028600-71047200	Weak transcription	Hela-S3	cervix
9	chr14:71028800-71048200	Weak transcription	HMEC	breast
10	chr14:71029000-71047200	Weak transcription	HUVEC	blood vessel
11	chr14:71029000-71056400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:71029000-71058800	Weak transcription	Esophagus	oesophagus
13	chr14:71029000-71066000	Weak transcription	Small Intestine	intestine
14	chr14:71029200-71047600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr14:71029400-71047400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr14:71029400-71049200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr14:71029600-71048600	Weak transcription	Colonic Mucosa	Colon
18	chr14:71029800-71046800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr14:71030200-71047000	Weak transcription	HSMM	muscle
20	chr14:71030600-71047200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr14:71030800-71045400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr14:71030800-71045400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr14:71030800-71046600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr14:71030800-71046800	Weak transcription	Osteobl	bone
25	chr14:71030800-71059000	Weak transcription	Right Ventricle	heart
26	chr14:71030800-71061200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr14:71031000-71047000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr14:71031000-71047400	Weak transcription	Brain Angular Gyrus	brain
29	chr14:71031000-71051600	Weak transcription	Psoas Muscle	Psoas
30	chr14:71031000-71059000	Weak transcription	Lung	lung
31	chr14:71031200-71047000	Weak transcription	Left Ventricle	heart
32	chr14:71031200-71051600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr14:71031200-71052000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr14:71031400-71049400	Weak transcription	HepG2	liver
35	chr14:71032400-71043400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr14:71032400-71047400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr14:71032600-71061000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr14:71032800-71042000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr14:71032800-71045200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr14:71032800-71045400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr14:71032800-71047400	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr14:71032800-71051200	Weak transcription	Rectal Smooth Muscle	rectum
43	chr14:71032800-71057000	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr14:71033000-71045000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr14:71033000-71045000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr14:71033000-71045600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr14:71033200-71047400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr14:71034200-71045000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr14:71034200-71045400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr14:71034200-71045600	Weak transcription	Fetal Muscle Trunk	muscle

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