Variant report

Variant	rs56687536
Chromosome Location	chr14:71068889-71068890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr14:71068880-71069348	GM12891	blood:	n/a	n/a
2	PAX5	chr14:71068843-71069334	GM12878	blood:	n/a	n/a
3	SPI1	chr14:71068842-71069263	GM12891	blood:	n/a	n/a
4	NFIC	chr14:71068807-71069408	GM12878	blood:	n/a	n/a
5	SPI1	chr14:71068773-71069548	GM12878	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:71053126..71055843-chr14:71067418..71069043,2	K562	blood:
2	chr14:71063881..71065934-chr14:71068184..71070871,2	K562	blood:
3	chr14:71068006..71069934-chr5:139842681..139845055,2	MCF-7	breast:
4	chr14:71067728..71070512-chr14:71142733..71145448,2	K562	blood:

No data

Variant related genes	Relation type
MED6	TF binding region
ENSG00000133997	Chromatin interaction

Extended variants
information (count: 133 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs1007402	0.84[ASN][1000 genomes]
rs10129782	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10131716	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10131740	0.84[ASN][1000 genomes]
rs10132252	0.84[ASN][1000 genomes]
rs10133963	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10134004	0.84[ASN][1000 genomes]
rs10135356	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10140087	0.84[ASN][1000 genomes]
rs10141744	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10143254	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10144535	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10144696	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147143	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10150160	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10151905	0.84[ASN][1000 genomes]
rs10483830	0.87[ASN][1000 genomes]
rs10483832	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1057127	0.84[ASN][1000 genomes]
rs10873239	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1112478	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11158863	0.80[ASN][1000 genomes]
rs11158867	0.84[ASN][1000 genomes]
rs1137491	0.86[ASN][1000 genomes]
rs12586299	0.82[ASN][1000 genomes]
rs12586441	0.80[ASN][1000 genomes]
rs12587666	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12587866	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12588723	0.80[ASN][1000 genomes]
rs12590117	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12590198	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12590217	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12590401	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12590471	0.80[ASN][1000 genomes]
rs12590610	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1538403	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17108197	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17108246	0.86[ASN][1000 genomes]
rs17108264	0.87[ASN][1000 genomes]
rs17108267	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108274	0.87[ASN][1000 genomes]
rs17108276	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108278	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108280	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17113651	0.87[ASN][1000 genomes]
rs1953803	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1959477	0.81[ASN][1000 genomes]
rs1962311	0.84[ASN][1000 genomes]
rs1962312	0.86[ASN][1000 genomes]
rs2153114	0.84[ASN][1000 genomes]
rs2332431	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2332432	0.86[ASN][1000 genomes]
rs28559756	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28612538	0.83[ASN][1000 genomes]
rs28754483	0.84[ASN][1000 genomes]
rs2877672	0.81[ASN][1000 genomes]
rs2877673	0.86[ASN][1000 genomes]
rs45523543	0.87[ASN][1000 genomes]
rs55965222	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56155089	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56322604	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56328037	0.86[ASN][1000 genomes]
rs56392092	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56721095	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56922268	0.87[ASN][1000 genomes]
rs57032041	0.80[ASN][1000 genomes]
rs57339942	0.87[ASN][1000 genomes]
rs57598551	0.87[ASN][1000 genomes]
rs58069917	0.86[ASN][1000 genomes]
rs58092588	0.83[ASN][1000 genomes]
rs58258245	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58919501	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58985060	0.81[ASN][1000 genomes]
rs59044667	0.86[ASN][1000 genomes]
rs59115232	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59233924	0.87[ASN][1000 genomes]
rs59475121	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59599422	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59748874	0.81[ASN][1000 genomes]
rs60120955	0.87[ASN][1000 genomes]
rs60251828	0.87[ASN][1000 genomes]
rs60370428	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60453577	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60848570	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60860517	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60862805	0.80[ASN][1000 genomes]
rs60867605	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60870618	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61388426	0.86[ASN][1000 genomes]
rs6420902	0.84[ASN][1000 genomes]
rs6573973	0.82[ASN][1000 genomes]
rs66572616	0.87[ASN][1000 genomes]
rs67193638	0.83[ASN][1000 genomes]
rs7141056	0.98[ASN][1000 genomes]
rs7141562	0.82[ASN][1000 genomes]
rs7141713	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141730	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145530	0.81[ASN][1000 genomes]
rs7150330	0.80[ASN][1000 genomes]
rs7150354	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7150545	0.82[ASN][1000 genomes]
rs7154858	0.81[ASN][1000 genomes]
rs7154904	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7155088	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155436	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155617	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7155629	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7156661	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7157073	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157455	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157618	0.80[ASN][1000 genomes]
rs7157685	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7158848	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73282126	0.80[ASN][1000 genomes]
rs73282127	0.80[ASN][1000 genomes]
rs73283917	0.82[ASN][1000 genomes]
rs7359112	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74062726	0.80[ASN][1000 genomes]
rs74062730	0.80[ASN][1000 genomes]
rs74062733	0.80[ASN][1000 genomes]
rs74062743	0.83[ASN][1000 genomes]
rs74062746	0.83[ASN][1000 genomes]
rs74062750	0.83[ASN][1000 genomes]
rs74062769	0.87[ASN][1000 genomes]
rs8004054	0.93[ASN][1000 genomes]
rs8005893	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006487	0.80[ASN][1000 genomes]
rs8010044	0.86[ASN][1000 genomes]
rs8012025	0.80[ASN][1000 genomes]
rs8016953	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8018765	0.82[ASN][1000 genomes]
rs8021911	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9323542	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71068000-71069400	Enhancers	Primary B cells from peripheral blood	blood
2	chr14:71068400-71078600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:71068800-71069800	Enhancers	GM12878-XiMat	blood

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