Variant report

Variant	rs28754483
Chromosome Location	chr14:71070566-71070567
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71063881..71065934-chr14:71068184..71070871,2	K562	blood:
2	chr14:71069782..71071616-chr14:71078487..71080835,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133997	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1007402	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10129782	0.84[ASN][1000 genomes]
rs10130071	0.94[ASN][1000 genomes]
rs10131716	0.84[ASN][1000 genomes]
rs10131740	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132252	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133963	0.84[ASN][1000 genomes]
rs10134004	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140087	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10141744	0.98[ASN][1000 genomes]
rs10143254	0.84[ASN][1000 genomes]
rs10144289	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10144535	0.80[ASN][1000 genomes]
rs10144653	0.94[ASN][1000 genomes]
rs10144696	0.84[ASN][1000 genomes]
rs10147143	0.84[ASN][1000 genomes]
rs10150160	0.82[ASN][1000 genomes]
rs10151905	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10483832	0.84[ASN][1000 genomes]
rs1057127	0.97[ASN][1000 genomes]
rs1112478	0.96[ASN][1000 genomes]
rs11158867	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1137491	0.99[ASN][1000 genomes]
rs12586886	0.93[ASN][1000 genomes]
rs12587866	0.84[ASN][1000 genomes]
rs12590117	0.84[ASN][1000 genomes]
rs12590198	0.84[ASN][1000 genomes]
rs12590217	0.84[ASN][1000 genomes]
rs12590471	0.92[ASN][1000 genomes]
rs17108267	0.84[ASN][1000 genomes]
rs17108276	0.84[ASN][1000 genomes]
rs17108278	0.84[ASN][1000 genomes]
rs17108280	0.84[ASN][1000 genomes]
rs1962311	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1962312	0.99[ASN][1000 genomes]
rs2018131	0.85[ASN][1000 genomes]
rs2153114	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332431	0.84[ASN][1000 genomes]
rs2877673	0.99[ASN][1000 genomes]
rs55965222	0.84[ASN][1000 genomes]
rs56155089	0.84[ASN][1000 genomes]
rs56322604	0.84[ASN][1000 genomes]
rs56687536	0.84[ASN][1000 genomes]
rs58919501	0.84[ASN][1000 genomes]
rs58985060	0.93[ASN][1000 genomes]
rs59115232	0.84[ASN][1000 genomes]
rs59475121	0.84[ASN][1000 genomes]
rs59599422	0.84[ASN][1000 genomes]
rs59748874	0.93[ASN][1000 genomes]
rs60370428	0.84[ASN][1000 genomes]
rs60453577	0.84[ASN][1000 genomes]
rs60867605	0.83[ASN][1000 genomes]
rs6420902	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573972	0.94[ASN][1000 genomes]
rs6573973	0.97[ASN][1000 genomes]
rs67193638	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7141056	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7141562	0.97[ASN][1000 genomes]
rs7141713	0.84[ASN][1000 genomes]
rs7141730	0.84[ASN][1000 genomes]
rs7146127	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7150330	0.93[ASN][1000 genomes]
rs7150545	0.97[ASN][1000 genomes]
rs7154858	0.93[ASN][1000 genomes]
rs7155088	0.84[ASN][1000 genomes]
rs7155436	0.84[ASN][1000 genomes]
rs7156661	0.85[ASN][1000 genomes]
rs7157073	0.84[ASN][1000 genomes]
rs7157455	0.84[ASN][1000 genomes]
rs7157685	0.85[ASN][1000 genomes]
rs7158848	0.97[ASN][1000 genomes]
rs7359112	0.84[ASN][1000 genomes]
rs8005893	0.84[ASN][1000 genomes]
rs8010044	0.99[ASN][1000 genomes]
rs8011847	0.94[ASN][1000 genomes]
rs8018765	0.97[ASN][1000 genomes]
rs8021911	0.85[ASN][1000 genomes]
rs9323542	0.98[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71068400-71078600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:71069800-71076800	Weak transcription	GM12878-XiMat	blood

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