Variant report

Variant	rs7150545
Chromosome Location	chr14:71030191-71030192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MED6-2	chr14:71029562-71030240	NONHSAT037567

Extended variants
information (count: 96 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1007402	0.84[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10129782	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs10130071	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10131716	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs10131740	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10132252	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10133963	0.81[ASN][1000 genomes]
rs10134004	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10140087	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10141744	0.95[ASN][1000 genomes]
rs10143254	0.82[ASN][1000 genomes]
rs10144289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10144653	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10144696	0.82[ASN][1000 genomes]
rs10147143	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs10150160	0.80[ASN][1000 genomes]
rs10151905	0.97[ASN][1000 genomes]
rs10483830	0.81[CHB][hapmap]
rs10483832	0.90[CHB][hapmap];0.93[CHD][hapmap];0.82[ASN][1000 genomes]
rs1057127	0.94[ASN][1000 genomes]
rs10873239	0.81[ASN][1000 genomes]
rs1112478	0.97[ASN][1000 genomes]
rs11158867	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1137491	0.96[ASN][1000 genomes]
rs12586886	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12587666	0.81[ASN][1000 genomes]
rs12587866	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs12590117	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs12590198	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs12590217	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs12590401	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs12590471	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12590610	0.90[CHB][hapmap];0.95[CHD][hapmap];0.82[ASN][1000 genomes]
rs1538403	0.90[CHB][hapmap];0.95[CHD][hapmap];0.82[ASN][1000 genomes]
rs17108197	0.82[ASN][1000 genomes]
rs17108246	0.81[CHB][hapmap]
rs17108264	0.90[CHB][hapmap]
rs17108267	0.82[ASN][1000 genomes]
rs17108274	0.81[CHB][hapmap]
rs17108276	0.82[ASN][1000 genomes]
rs17108278	0.82[ASN][1000 genomes]
rs17108280	0.90[CHB][hapmap];0.93[CHD][hapmap];0.82[ASN][1000 genomes]
rs17113651	0.85[CHB][hapmap]
rs1953803	0.82[ASN][1000 genomes]
rs1962311	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1962312	0.96[ASN][1000 genomes]
rs2018131	0.83[ASN][1000 genomes]
rs2153114	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2332431	0.90[CHB][hapmap];0.93[CHD][hapmap];0.82[ASN][1000 genomes]
rs28559756	0.82[ASN][1000 genomes]
rs28754483	0.97[ASN][1000 genomes]
rs2877673	0.96[ASN][1000 genomes]
rs55965222	0.82[ASN][1000 genomes]
rs56155089	0.82[ASN][1000 genomes]
rs56322604	0.82[ASN][1000 genomes]
rs56392092	0.81[ASN][1000 genomes]
rs56687536	0.82[ASN][1000 genomes]
rs56721095	0.82[ASN][1000 genomes]
rs58919501	0.82[ASN][1000 genomes]
rs58985060	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs59115232	0.82[ASN][1000 genomes]
rs59475121	0.82[ASN][1000 genomes]
rs59599422	0.82[ASN][1000 genomes]
rs59748874	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs60370428	0.82[ASN][1000 genomes]
rs60453577	0.82[ASN][1000 genomes]
rs60867605	0.83[ASN][1000 genomes]
rs60870618	0.82[ASN][1000 genomes]
rs6420902	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6573972	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6573973	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67193638	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7141056	0.89[CEU][hapmap];0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs7141562	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141713	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs7141730	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs7146127	0.84[ASN][1000 genomes]
rs7150330	0.90[ASN][1000 genomes]
rs7150354	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs7154858	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7154904	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs7155088	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs7155436	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs7156661	0.90[CHB][hapmap];0.93[CHD][hapmap];0.83[ASN][1000 genomes]
rs7157073	0.82[ASN][1000 genomes]
rs7157455	0.82[ASN][1000 genomes]
rs7157685	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs7158848	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7359112	0.82[ASN][1000 genomes]
rs8005893	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs8010044	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs8011847	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8016953	0.82[ASN][1000 genomes]
rs8018765	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8021911	0.90[CHB][hapmap];0.93[CHD][hapmap];0.83[ASN][1000 genomes]
rs9323542	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7150545	MED6	cis	cerebellum	SCAN

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70999800-71030200	Weak transcription	Brain Angular Gyrus	brain
2	chr14:71004000-71030200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:71004200-71034600	Weak transcription	Brain Substantia Nigra	brain
4	chr14:71020800-71032000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr14:71022800-71047000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr14:71023000-71045800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr14:71023200-71034000	Weak transcription	NHEK	skin
8	chr14:71023200-71050400	Weak transcription	Gastric	stomach
9	chr14:71025400-71030200	Weak transcription	HSMMtube	muscle
10	chr14:71025400-71047600	Weak transcription	NH-A	brain
11	chr14:71026400-71030200	Weak transcription	Psoas Muscle	Psoas
12	chr14:71026400-71047000	Weak transcription	Colon Smooth Muscle	Colon
13	chr14:71026800-71035200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr14:71027400-71031000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:71027400-71047200	Weak transcription	NHLF	lung
16	chr14:71027600-71032000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr14:71027800-71034200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr14:71028000-71030800	Strong transcription	Skeletal Muscle Male	skeletal muscle
19	chr14:71028000-71031200	ZNF genes & repeats	Primary B cells from cord blood	blood
20	chr14:71028000-71032800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr14:71028200-71030600	Strong transcription	Brain Cingulate Gyrus	brain
22	chr14:71028200-71031000	Strong transcription	Pancreatic Islets	Pancreatic Islet
23	chr14:71028200-71031000	Strong transcription	Lung	lung
24	chr14:71028200-71031200	ZNF genes & repeats	Dnd41	blood
25	chr14:71028200-71032800	Strong transcription	Stomach Smooth Muscle	stomach
26	chr14:71028200-71033400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
27	chr14:71028200-71034000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr14:71028400-71031000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
29	chr14:71028400-71031200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr14:71028400-71031200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr14:71028400-71032200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr14:71028400-71032600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
33	chr14:71028400-71032800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr14:71028400-71033000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr14:71028400-71033400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
36	chr14:71028400-71034200	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr14:71028400-71035000	Strong transcription	Adipose Nuclei	Adipose
38	chr14:71028600-71030800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr14:71028600-71031400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
40	chr14:71028600-71032000	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr14:71028600-71047200	Weak transcription	Fetal Heart	heart
42	chr14:71028600-71047200	Weak transcription	Hela-S3	cervix
43	chr14:71028800-71031000	Strong transcription	Pancreas	Pancrea
44	chr14:71028800-71031000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
45	chr14:71028800-71031400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
46	chr14:71028800-71031600	ZNF genes & repeats	Primary T cells from cord blood	blood
47	chr14:71028800-71032400	Strong transcription	Aorta	Aorta
48	chr14:71028800-71032600	Strong transcription	Ovary	ovary
49	chr14:71028800-71035000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr14:71028800-71048200	Weak transcription	HMEC	breast

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