Variant report

Variant	rs1007402
Chromosome Location	chr14:71064314-71064315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71057525..71060066-chr14:71062663..71064760,2	K562	blood:

Variant related genes	Relation type
ENSG00000133997	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10129782	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs10130071	0.94[ASN][1000 genomes]
rs10131716	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs10131740	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132252	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133963	0.84[ASN][1000 genomes]
rs10134004	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140087	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10141744	0.98[ASN][1000 genomes]
rs10143254	0.84[ASN][1000 genomes]
rs10144289	0.84[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];0.89[MKK][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10144535	0.80[ASN][1000 genomes]
rs10144653	0.84[CEU][hapmap];0.94[ASN][1000 genomes]
rs10144696	0.84[ASN][1000 genomes]
rs10147143	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs10150160	0.82[ASN][1000 genomes]
rs10151905	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10483832	0.85[CHB][hapmap];0.93[CHD][hapmap];0.84[ASN][1000 genomes]
rs1057127	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1112478	0.96[ASN][1000 genomes]
rs11158867	1.00[ASW][hapmap];0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1137491	0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12586886	0.93[ASN][1000 genomes]
rs12587866	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs12590117	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs12590198	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs12590217	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs12590401	0.83[CHB][hapmap]
rs12590471	0.94[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs12590610	0.85[CHB][hapmap];0.95[CHD][hapmap]
rs1538403	0.85[CHB][hapmap];0.95[CHD][hapmap]
rs17108264	0.84[CHB][hapmap]
rs17108267	0.84[ASN][1000 genomes]
rs17108276	0.84[ASN][1000 genomes]
rs17108278	0.84[ASN][1000 genomes]
rs17108280	0.85[CHB][hapmap];0.93[CHD][hapmap];0.84[ASN][1000 genomes]
rs17113651	0.80[CHB][hapmap]
rs1962311	0.94[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1962312	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2018131	0.85[ASN][1000 genomes]
rs2153114	0.95[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332431	0.85[CHB][hapmap];0.93[CHD][hapmap];0.84[ASN][1000 genomes]
rs28754483	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2877673	0.99[ASN][1000 genomes]
rs55965222	0.84[ASN][1000 genomes]
rs56155089	0.84[ASN][1000 genomes]
rs56322604	0.84[ASN][1000 genomes]
rs56687536	0.84[ASN][1000 genomes]
rs58919501	0.84[ASN][1000 genomes]
rs58985060	0.93[ASN][1000 genomes]
rs59115232	0.84[ASN][1000 genomes]
rs59475121	0.84[ASN][1000 genomes]
rs59599422	0.84[ASN][1000 genomes]
rs59748874	0.93[ASN][1000 genomes]
rs60370428	0.84[ASN][1000 genomes]
rs60453577	0.84[ASN][1000 genomes]
rs60867605	0.83[ASN][1000 genomes]
rs6420902	0.87[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573972	0.94[ASN][1000 genomes]
rs6573973	0.97[ASN][1000 genomes]
rs67193638	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7141056	0.94[CEU][hapmap];0.85[CHB][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7141562	0.97[ASN][1000 genomes]
rs7141713	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs7141730	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs7146127	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7150330	0.93[ASN][1000 genomes]
rs7150354	0.88[CHB][hapmap]
rs7150545	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7154858	0.94[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs7154904	0.83[CHB][hapmap]
rs7155088	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs7155436	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs7156661	0.85[CHB][hapmap];0.93[CHD][hapmap];0.85[ASN][1000 genomes]
rs7157073	0.84[ASN][1000 genomes]
rs7157455	0.84[ASN][1000 genomes]
rs7157685	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs7158848	0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs7359112	0.84[ASN][1000 genomes]
rs8005893	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs8010044	1.00[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs8011847	0.94[ASN][1000 genomes]
rs8018765	0.97[ASN][1000 genomes]
rs8021911	0.85[CHB][hapmap];0.93[CHD][hapmap];0.85[ASN][1000 genomes]
rs9323542	0.94[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71029000-71066000	Weak transcription	Small Intestine	intestine
2	chr14:71042000-71066600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:71045200-71064400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:71045400-71064600	Strong transcription	Primary B cells from peripheral blood	blood
5	chr14:71045600-71064600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:71045600-71064600	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr14:71046200-71064400	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr14:71046400-71064800	Strong transcription	Primary T helper cells PMA-I stimulated	--
9	chr14:71046800-71064600	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr14:71047200-71064600	Strong transcription	Rectal Mucosa Donor 31	rectum
11	chr14:71047400-71064600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr14:71047400-71064800	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr14:71047400-71066000	Weak transcription	Fetal Heart	heart
14	chr14:71048000-71066000	Weak transcription	K562	blood
15	chr14:71048400-71064600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr14:71049600-71066000	Weak transcription	Stomach Mucosa	stomach
17	chr14:71051400-71066800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr14:71058200-71065800	Weak transcription	NHDF-Ad	bronchial
19	chr14:71061600-71066600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:71062200-71065800	Weak transcription	HUVEC	blood vessel
21	chr14:71062200-71065800	Weak transcription	Osteobl	bone
22	chr14:71062200-71066000	Weak transcription	Fetal Brain Male	brain
23	chr14:71062400-71066000	Weak transcription	HSMMtube	muscle
24	chr14:71062400-71066200	Weak transcription	Right Ventricle	heart
25	chr14:71062600-71065600	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr14:71062600-71065800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr14:71062600-71066800	Weak transcription	Pancreas	Pancrea
28	chr14:71062800-71066200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr14:71063000-71065800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr14:71063000-71065800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr14:71063000-71065800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr14:71063000-71066000	Weak transcription	NHLF	lung
33	chr14:71063200-71065400	Weak transcription	Hela-S3	cervix
34	chr14:71063200-71065600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr14:71063200-71065600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr14:71063200-71065600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr14:71063200-71065600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr14:71063200-71065600	Weak transcription	Brain Angular Gyrus	brain
39	chr14:71063200-71065600	Weak transcription	Brain Germinal Matrix	brain
40	chr14:71063200-71065600	Weak transcription	NHEK	skin
41	chr14:71063200-71065800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr14:71063200-71065800	Weak transcription	Fetal Intestine Large	intestine
43	chr14:71063200-71065800	Weak transcription	Ovary	ovary
44	chr14:71063200-71065800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr14:71063200-71065800	Weak transcription	A549	lung
46	chr14:71063200-71066000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr14:71063200-71066000	Weak transcription	Gastric	stomach
48	chr14:71063200-71066000	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr14:71063200-71066000	Weak transcription	Psoas Muscle	Psoas
50	chr14:71063200-71066000	Weak transcription	Rectal Smooth Muscle	rectum

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