Variant report

Variant	rs10134004
Chromosome Location	chr14:71049388-71049389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71048335..71050888-chr14:71050939..71052939,2	K562	blood:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1007402	0.89[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10129782	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs10130071	0.94[ASN][1000 genomes]
rs10131716	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs10131740	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132252	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133963	0.84[ASN][1000 genomes]
rs10140087	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10141744	0.98[ASN][1000 genomes]
rs10143254	0.84[ASN][1000 genomes]
rs10144289	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10144535	0.80[ASN][1000 genomes]
rs10144653	0.86[CEU][hapmap];0.94[ASN][1000 genomes]
rs10144696	0.84[ASN][1000 genomes]
rs10147143	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs10150160	0.82[ASN][1000 genomes]
rs10151905	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10483830	0.82[CHB][hapmap]
rs10483832	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs1057127	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1112478	0.96[ASN][1000 genomes]
rs11158867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1137491	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12586886	0.93[ASN][1000 genomes]
rs12587866	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs12590117	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs12590198	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs12590217	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs12590401	0.89[CHB][hapmap]
rs12590471	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12590610	0.90[CHB][hapmap]
rs1538403	0.90[CHB][hapmap]
rs17108246	0.81[CHB][hapmap]
rs17108264	0.90[CHB][hapmap]
rs17108267	0.84[ASN][1000 genomes]
rs17108274	0.81[CHB][hapmap]
rs17108276	0.84[ASN][1000 genomes]
rs17108278	0.84[ASN][1000 genomes]
rs17108280	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs17113651	0.86[CHB][hapmap]
rs1962311	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1962312	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2018131	0.85[ASN][1000 genomes]
rs2153114	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332431	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs28754483	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2877673	0.99[ASN][1000 genomes]
rs55965222	0.84[ASN][1000 genomes]
rs56155089	0.84[ASN][1000 genomes]
rs56322604	0.84[ASN][1000 genomes]
rs56687536	0.84[ASN][1000 genomes]
rs58919501	0.84[ASN][1000 genomes]
rs58985060	0.93[ASN][1000 genomes]
rs59115232	0.84[ASN][1000 genomes]
rs59475121	0.84[ASN][1000 genomes]
rs59599422	0.84[ASN][1000 genomes]
rs59748874	0.93[ASN][1000 genomes]
rs60370428	0.84[ASN][1000 genomes]
rs60453577	0.84[ASN][1000 genomes]
rs60867605	0.83[ASN][1000 genomes]
rs6420902	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573972	0.94[ASN][1000 genomes]
rs6573973	0.97[ASN][1000 genomes]
rs67193638	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7141056	0.95[CEU][hapmap];0.90[CHB][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7141562	0.97[ASN][1000 genomes]
rs7141713	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs7141730	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs7146127	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7150330	0.93[ASN][1000 genomes]
rs7150354	0.89[CHB][hapmap]
rs7150545	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7154858	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7154904	0.89[CHB][hapmap]
rs7155088	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs7155436	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs7156661	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs7157073	0.84[ASN][1000 genomes]
rs7157455	0.84[ASN][1000 genomes]
rs7157685	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs7158848	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7359112	0.84[ASN][1000 genomes]
rs8005893	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs8010044	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs8011847	0.94[ASN][1000 genomes]
rs8018765	0.97[ASN][1000 genomes]
rs8021911	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs9323542	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv12231	chr14:71046524-71050230	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71023200-71050400	Weak transcription	Gastric	stomach
2	chr14:71029000-71056400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:71029000-71058800	Weak transcription	Esophagus	oesophagus
4	chr14:71029000-71066000	Weak transcription	Small Intestine	intestine
5	chr14:71030800-71059000	Weak transcription	Right Ventricle	heart
6	chr14:71030800-71061200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr14:71031000-71051600	Weak transcription	Psoas Muscle	Psoas
8	chr14:71031000-71059000	Weak transcription	Lung	lung
9	chr14:71031200-71051600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr14:71031200-71052000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr14:71031400-71049400	Weak transcription	HepG2	liver
12	chr14:71032600-71061000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:71032800-71051200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr14:71032800-71057000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr14:71034200-71049400	Weak transcription	Fetal Brain Male	brain
16	chr14:71034600-71050400	Weak transcription	Fetal Intestine Small	intestine
17	chr14:71034800-71051200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:71034800-71061200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr14:71035000-71051000	Weak transcription	Fetal Stomach	stomach
20	chr14:71035000-71053400	Weak transcription	Pancreas	Pancrea
21	chr14:71035000-71059000	Weak transcription	Spleen	Spleen
22	chr14:71036800-71059800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr14:71037000-71059000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr14:71042000-71066600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr14:71043600-71060400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:71043600-71063400	Strong transcription	Primary B cells from cord blood	blood
27	chr14:71043800-71051000	Weak transcription	Aorta	Aorta
28	chr14:71044400-71063600	Strong transcription	Primary T cells from cord blood	blood
29	chr14:71044600-71063400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr14:71045000-71052400	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr14:71045000-71063400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr14:71045000-71064200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr14:71045200-71063400	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr14:71045200-71063600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr14:71045200-71063800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr14:71045200-71064400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:71045400-71049400	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr14:71045400-71052200	Strong transcription	Brain Germinal Matrix	brain
39	chr14:71045400-71063000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr14:71045400-71063200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr14:71045400-71063400	Strong transcription	Brain Anterior Caudate	brain
42	chr14:71045400-71063600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr14:71045400-71063800	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr14:71045400-71064600	Strong transcription	Primary B cells from peripheral blood	blood
45	chr14:71045600-71055200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr14:71045600-71063800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr14:71045600-71064600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr14:71045600-71064600	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr14:71045800-71057200	Strong transcription	Fetal Muscle Leg	muscle
50	chr14:71045800-71063400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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