Variant report

Variant	rs2332432
Chromosome Location	chr14:71082233-71082234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10129782	0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs10131716	0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs10133963	0.85[ASN][1000 genomes]
rs10135356	0.90[ASN][1000 genomes]
rs10143254	0.86[ASN][1000 genomes]
rs10144289	0.81[CHB][hapmap]
rs10144535	0.81[ASN][1000 genomes]
rs10144696	0.86[ASN][1000 genomes]
rs10147143	0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs10150160	0.84[ASN][1000 genomes]
rs10483830	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10483832	0.90[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs11158863	0.89[ASN][1000 genomes]
rs11158867	0.81[CHB][hapmap]
rs12586299	0.93[ASN][1000 genomes]
rs12586392	0.89[ASN][1000 genomes]
rs12586441	0.89[ASN][1000 genomes]
rs12587714	0.88[ASN][1000 genomes]
rs12587866	0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs12588723	0.89[ASN][1000 genomes]
rs12589512	0.84[ASN][1000 genomes]
rs12590117	0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs12590198	0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs12590217	0.90[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs12590401	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs12590471	0.81[CHB][hapmap]
rs12590610	0.90[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap]
rs1538403	0.90[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap]
rs17108201	0.88[ASN][1000 genomes]
rs17108246	0.82[ASW][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17108264	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs17108267	0.86[ASN][1000 genomes]
rs17108274	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17108276	0.86[ASN][1000 genomes]
rs17108278	0.86[ASN][1000 genomes]
rs17108280	0.90[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs17108291	0.80[ASN][1000 genomes]
rs17113651	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1959477	0.90[ASN][1000 genomes]
rs2018131	0.84[ASN][1000 genomes]
rs2153114	0.81[CHB][hapmap]
rs2185146	0.80[ASN][1000 genomes]
rs2332431	0.90[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs28612538	0.92[ASN][1000 genomes]
rs2877672	0.91[ASN][1000 genomes]
rs45523543	0.97[ASN][1000 genomes]
rs55965222	0.86[ASN][1000 genomes]
rs56155089	0.86[ASN][1000 genomes]
rs56322604	0.86[ASN][1000 genomes]
rs56328037	0.96[ASN][1000 genomes]
rs56687536	0.86[ASN][1000 genomes]
rs56922268	0.97[ASN][1000 genomes]
rs57032041	0.89[ASN][1000 genomes]
rs57339942	0.99[ASN][1000 genomes]
rs57598551	0.97[ASN][1000 genomes]
rs58069917	0.96[ASN][1000 genomes]
rs58092588	0.92[ASN][1000 genomes]
rs58777530	0.88[ASN][1000 genomes]
rs58919501	0.86[ASN][1000 genomes]
rs59044667	0.96[ASN][1000 genomes]
rs59115232	0.86[ASN][1000 genomes]
rs59233924	0.97[ASN][1000 genomes]
rs59475121	0.86[ASN][1000 genomes]
rs59599422	0.86[ASN][1000 genomes]
rs60120955	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs60251828	0.97[ASN][1000 genomes]
rs60370428	0.86[ASN][1000 genomes]
rs60453577	0.86[ASN][1000 genomes]
rs60555424	0.85[ASN][1000 genomes]
rs60860517	0.92[ASN][1000 genomes]
rs60862805	0.89[ASN][1000 genomes]
rs60867605	0.84[ASN][1000 genomes]
rs61388426	0.96[ASN][1000 genomes]
rs6420902	0.81[CHB][hapmap]
rs66572616	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7141056	0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7141713	0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7141730	0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7145530	0.91[ASN][1000 genomes]
rs7146127	0.86[ASN][1000 genomes]
rs7150354	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs7154858	0.81[CHB][hapmap]
rs7154904	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs7155088	0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7155436	0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs7156661	0.90[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs7157073	0.86[ASN][1000 genomes]
rs7157455	0.86[ASN][1000 genomes]
rs7157618	0.89[ASN][1000 genomes]
rs7157685	0.90[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs7158201	0.88[ASN][1000 genomes]
rs7158848	0.81[CHB][hapmap]
rs73282126	0.89[ASN][1000 genomes]
rs73282127	0.89[ASN][1000 genomes]
rs73282153	0.88[ASN][1000 genomes]
rs73283917	0.90[ASN][1000 genomes]
rs7359112	0.86[ASN][1000 genomes]
rs74062726	0.89[ASN][1000 genomes]
rs74062730	0.89[ASN][1000 genomes]
rs74062733	0.89[ASN][1000 genomes]
rs74062743	0.92[ASN][1000 genomes]
rs74062746	0.92[ASN][1000 genomes]
rs74062750	0.92[ASN][1000 genomes]
rs74062769	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs8004054	0.81[ASN][1000 genomes]
rs8005893	0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs8006487	0.89[ASN][1000 genomes]
rs8010044	0.81[CHB][hapmap]
rs8012025	0.89[ASN][1000 genomes]
rs8021911	0.90[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs9323542	0.81[CHB][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2332432	SMOC1	cis	parietal	SCAN
rs2332432	MED6	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71080800-71084200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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