Variant report

Variant	rs7158201
Chromosome Location	chr14:71010546-71010547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10129782	0.90[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap]
rs10131716	0.90[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap]
rs10135356	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10144289	0.81[CHB][hapmap]
rs10147143	0.90[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap]
rs10483830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10483832	0.90[CHB][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.81[LWK][hapmap];0.86[TSI][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs10873239	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11158863	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11158867	0.81[CHB][hapmap]
rs12586299	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12586325	0.87[CEU][hapmap]
rs12586328	0.87[CEU][hapmap]
rs12586392	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12586441	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12587666	0.80[ASN][1000 genomes]
rs12587714	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12587866	0.90[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap]
rs12588723	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12590117	0.90[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap]
rs12590198	0.90[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap]
rs12590217	0.90[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap]
rs12590401	0.89[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12590471	0.81[CHB][hapmap]
rs12590610	0.81[ASW][hapmap];0.90[CHB][hapmap];0.80[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs1538403	0.90[CHB][hapmap];0.80[CHD][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17108107	0.87[CEU][hapmap]
rs17108197	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17108201	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17108246	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17108264	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17108274	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17108280	0.90[CHB][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.81[LWK][hapmap];0.86[TSI][hapmap];0.89[YRI][hapmap]
rs17113651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1953798	0.87[CEU][hapmap]
rs1953803	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1959477	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1959483	0.87[CEU][hapmap]
rs2153114	0.81[CHB][hapmap]
rs2332431	0.90[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap]
rs2332432	0.88[ASN][1000 genomes]
rs28559756	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs28612538	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2877672	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs45523543	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902817	0.87[CEU][hapmap]
rs56328037	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56392092	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56721095	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs56922268	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57032041	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57339942	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57598551	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58069917	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58092588	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58777530	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59044667	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59233924	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60120955	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60251828	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60555424	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60848570	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs60860517	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60862805	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60867605	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs60870618	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61388426	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6420902	0.81[CHB][hapmap]
rs66572616	0.89[ASN][1000 genomes]
rs7141056	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs7141713	0.90[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap]
rs7141730	0.90[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap]
rs7145530	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7150354	0.89[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7154858	0.81[CHB][hapmap]
rs7154904	0.94[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7155088	0.90[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap]
rs7155436	0.90[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap]
rs7156661	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs7157073	0.81[AFR][1000 genomes]
rs7157618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7157685	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs7158848	0.81[CHB][hapmap]
rs73282126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73282127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73282153	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73283917	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74062726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs74062730	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs74062733	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs74062743	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74062746	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74062750	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74062769	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8005893	0.90[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap]
rs8006487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8010044	0.81[CHB][hapmap]
rs8010473	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8012025	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8014252	0.87[CEU][hapmap]
rs8016953	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8021911	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs9323542	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565042	chr14:70951234-71011734	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1050615	chr14:70954149-71013235	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763072	chr14:70954149-71013247	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3364661	chr14:71003492-71010843	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70988000-71028200	Weak transcription	Esophagus	oesophagus
2	chr14:70988000-71029800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr14:70988800-71028800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr14:70990400-71029600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr14:70991400-71028200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr14:70991600-71014600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:70991600-71022400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr14:70991600-71028200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr14:70991600-71028800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:70991800-71011800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr14:70992200-71022600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr14:70999800-71022400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr14:70999800-71024600	Weak transcription	Colon Smooth Muscle	Colon
14	chr14:70999800-71029200	Weak transcription	Brain Anterior Caudate	brain
15	chr14:70999800-71030200	Weak transcription	Brain Angular Gyrus	brain
16	chr14:71000000-71028800	Weak transcription	Primary T cells from cord blood	blood
17	chr14:71004000-71030200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr14:71004200-71022600	Weak transcription	Spleen	Spleen
19	chr14:71004200-71028000	Weak transcription	Primary B cells from cord blood	blood
20	chr14:71004200-71034600	Weak transcription	Brain Substantia Nigra	brain
21	chr14:71004400-71011800	Weak transcription	Aorta	Aorta
22	chr14:71004400-71011800	Weak transcription	Left Ventricle	heart
23	chr14:71004400-71012000	Weak transcription	Pancreas	Pancrea
24	chr14:71004400-71022400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr14:71004400-71028000	Weak transcription	Liver	Liver
26	chr14:71004400-71029800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr14:71004400-71030000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr14:71004600-71011800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr14:71004600-71011800	Weak transcription	Adipose Nuclei	Adipose
30	chr14:71005000-71010600	Weak transcription	Ovary	ovary
31	chr14:71005000-71012000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr14:71005000-71022600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr14:71007000-71029200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr14:71010000-71014000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr14:71010400-71012200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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