Variant report

Variant	rs60860517
Chromosome Location	chr14:71029919-71029920
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MED6-2	chr14:71029562-71030240	NONHSAT037567

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10129782	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10131716	0.83[ASN][1000 genomes]
rs10133963	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10135356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10143254	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10144535	0.81[AMR][1000 genomes]
rs10144696	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10147143	0.83[ASN][1000 genomes]
rs10150160	0.81[ASN][1000 genomes]
rs10483830	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10483832	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10873239	0.82[ASN][1000 genomes]
rs11158863	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12586299	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12586392	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12586441	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12587666	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12587714	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12587866	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12588723	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12590117	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12590198	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12590217	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12590401	0.83[ASN][1000 genomes]
rs12590610	0.84[ASN][1000 genomes]
rs1538403	0.83[ASN][1000 genomes]
rs17108197	0.84[ASN][1000 genomes]
rs17108201	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17108246	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17108264	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17108267	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17108274	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17108276	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17108278	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17108280	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17113651	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1953803	0.83[ASN][1000 genomes]
rs1959477	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2018131	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2332431	0.83[ASN][1000 genomes]
rs2332432	0.92[ASN][1000 genomes]
rs28559756	0.84[ASN][1000 genomes]
rs28612538	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2877672	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs45523543	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55965222	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56155089	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56322604	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56328037	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56392092	0.98[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs56687536	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56721095	0.99[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs56922268	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57032041	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57339942	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57598551	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58069917	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58092588	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58258245	0.83[AMR][1000 genomes]
rs58777530	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58919501	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59044667	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59115232	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59233924	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59475121	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59599422	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60120955	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60251828	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60370428	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60453577	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60555424	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60862805	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60867605	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs60870618	0.83[ASN][1000 genomes]
rs61388426	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66572616	0.93[ASN][1000 genomes]
rs7141056	0.81[ASN][1000 genomes]
rs7141713	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7141730	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7145530	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7150354	0.84[ASN][1000 genomes]
rs7154904	0.84[ASN][1000 genomes]
rs7155088	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7155436	0.83[ASN][1000 genomes]
rs7156661	0.82[ASN][1000 genomes]
rs7157073	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7157455	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7157618	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7157685	0.82[ASN][1000 genomes]
rs7158201	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73282126	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73282127	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73282153	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73283917	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7359112	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74062726	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74062730	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74062733	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74062743	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74062746	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74062750	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74062769	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8005893	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8006487	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010473	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8012025	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8016953	0.84[ASN][1000 genomes]
rs8021911	0.82[ASN][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70999800-71030200	Weak transcription	Brain Angular Gyrus	brain
2	chr14:71004000-71030200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:71004200-71034600	Weak transcription	Brain Substantia Nigra	brain
4	chr14:71004400-71030000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr14:71020800-71032000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr14:71022800-71047000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr14:71023000-71045800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr14:71023200-71034000	Weak transcription	NHEK	skin
9	chr14:71023200-71050400	Weak transcription	Gastric	stomach
10	chr14:71025400-71030200	Weak transcription	HSMMtube	muscle
11	chr14:71025400-71047600	Weak transcription	NH-A	brain
12	chr14:71026400-71030200	Weak transcription	Psoas Muscle	Psoas
13	chr14:71026400-71047000	Weak transcription	Colon Smooth Muscle	Colon
14	chr14:71026800-71035200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr14:71027400-71031000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:71027400-71047200	Weak transcription	NHLF	lung
17	chr14:71027600-71032000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr14:71027800-71034200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr14:71028000-71030800	Strong transcription	Skeletal Muscle Male	skeletal muscle
20	chr14:71028000-71031200	ZNF genes & repeats	Primary B cells from cord blood	blood
21	chr14:71028000-71032800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr14:71028200-71030000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
23	chr14:71028200-71030600	Strong transcription	Brain Cingulate Gyrus	brain
24	chr14:71028200-71031000	Strong transcription	Pancreatic Islets	Pancreatic Islet
25	chr14:71028200-71031000	Strong transcription	Lung	lung
26	chr14:71028200-71031200	ZNF genes & repeats	Dnd41	blood
27	chr14:71028200-71032800	Strong transcription	Stomach Smooth Muscle	stomach
28	chr14:71028200-71033400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
29	chr14:71028200-71034000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr14:71028400-71030000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr14:71028400-71030000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
32	chr14:71028400-71031000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
33	chr14:71028400-71031200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr14:71028400-71031200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr14:71028400-71032200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr14:71028400-71032600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
37	chr14:71028400-71032800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr14:71028400-71033000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr14:71028400-71033400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
40	chr14:71028400-71034200	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr14:71028400-71035000	Strong transcription	Adipose Nuclei	Adipose
42	chr14:71028600-71030800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr14:71028600-71031400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
44	chr14:71028600-71032000	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr14:71028600-71047200	Weak transcription	Fetal Heart	heart
46	chr14:71028600-71047200	Weak transcription	Hela-S3	cervix
47	chr14:71028800-71031000	Strong transcription	Pancreas	Pancrea
48	chr14:71028800-71031000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
49	chr14:71028800-71031400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
50	chr14:71028800-71031600	ZNF genes & repeats	Primary T cells from cord blood	blood

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