Variant report

Variant	rs1959477
Chromosome Location	chr14:71034216-71034217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70512589..70513344-chr14:71033917..71035203,4	MCF-7	breast:

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10129782	0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs10131716	0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs10133963	0.80[ASN][1000 genomes]
rs10135356	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10143254	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10144289	0.81[CHB][hapmap]
rs10144696	0.81[ASN][1000 genomes]
rs10147143	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs10483830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10483832	0.90[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10873239	0.80[ASN][1000 genomes]
rs11158863	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11158867	0.81[CHB][hapmap]
rs12586299	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12586325	0.88[CEU][hapmap]
rs12586328	0.88[CEU][hapmap]
rs12586392	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12586441	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12587666	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12587714	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12587866	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs12588723	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12590117	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs12590198	0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs12590217	0.90[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs12590401	0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs12590471	0.81[CHB][hapmap]
rs12590610	0.90[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs1538403	0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs17108107	0.87[CEU][hapmap]
rs17108197	0.82[ASN][1000 genomes]
rs17108201	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17108246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17108264	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17108267	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17108274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17108276	0.81[ASN][1000 genomes]
rs17108278	0.81[ASN][1000 genomes]
rs17108280	0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs17113651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1953798	0.87[CEU][hapmap]
rs1953803	0.81[ASN][1000 genomes]
rs1959483	0.87[CEU][hapmap]
rs2018131	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2153114	0.82[CHB][hapmap]
rs2332431	0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2332432	0.90[ASN][1000 genomes]
rs28559756	0.82[ASN][1000 genomes]
rs28612538	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2877672	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45523543	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902817	0.88[CEU][hapmap]
rs55965222	0.81[ASN][1000 genomes]
rs56155089	0.81[ASN][1000 genomes]
rs56322604	0.81[ASN][1000 genomes]
rs56328037	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56392092	0.82[ASN][1000 genomes]
rs56687536	0.81[ASN][1000 genomes]
rs56721095	0.82[ASN][1000 genomes]
rs56922268	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57032041	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57339942	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57598551	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58069917	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58092588	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58258245	0.86[AMR][1000 genomes]
rs58777530	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58919501	0.81[ASN][1000 genomes]
rs59044667	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59115232	0.81[ASN][1000 genomes]
rs59233924	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59475121	0.81[ASN][1000 genomes]
rs59599422	0.81[ASN][1000 genomes]
rs60120955	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60251828	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60370428	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs60453577	0.81[ASN][1000 genomes]
rs60555424	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60860517	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60862805	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60867605	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60870618	0.81[ASN][1000 genomes]
rs61388426	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6420902	0.81[CHB][hapmap]
rs66572616	0.91[ASN][1000 genomes]
rs7141056	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7141713	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7141730	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7145530	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7150354	0.89[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs7154858	0.82[CHB][hapmap]
rs7154904	0.94[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs7155088	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7155436	0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7156661	0.90[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs7157073	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7157455	0.81[ASN][1000 genomes]
rs7157618	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7157685	0.91[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs7158201	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7158848	0.81[CHB][hapmap]
rs73282126	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73282127	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73282153	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73283917	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7359112	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs74062726	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74062730	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74062733	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74062743	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74062746	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74062750	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74062769	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8005893	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8006487	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8010044	0.81[CHB][hapmap]
rs8010473	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8012025	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8014252	0.87[CEU][hapmap]
rs8016953	0.82[ASN][1000 genomes]
rs8021911	0.90[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.80[ASN][1000 genomes]
rs9323542	0.82[CHB][hapmap]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71004200-71034600	Weak transcription	Brain Substantia Nigra	brain
2	chr14:71022800-71047000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr14:71023000-71045800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr14:71023200-71050400	Weak transcription	Gastric	stomach
5	chr14:71025400-71047600	Weak transcription	NH-A	brain
6	chr14:71026400-71047000	Weak transcription	Colon Smooth Muscle	Colon
7	chr14:71026800-71035200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr14:71027400-71047200	Weak transcription	NHLF	lung
9	chr14:71028400-71035000	Strong transcription	Adipose Nuclei	Adipose
10	chr14:71028600-71047200	Weak transcription	Fetal Heart	heart
11	chr14:71028600-71047200	Weak transcription	Hela-S3	cervix
12	chr14:71028800-71035000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:71028800-71048200	Weak transcription	HMEC	breast
14	chr14:71029000-71034400	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr14:71029000-71035000	Strong transcription	Liver	Liver
16	chr14:71029000-71035200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr14:71029000-71035400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr14:71029000-71047200	Weak transcription	HUVEC	blood vessel
19	chr14:71029000-71056400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr14:71029000-71058800	Weak transcription	Esophagus	oesophagus
21	chr14:71029000-71066000	Weak transcription	Small Intestine	intestine
22	chr14:71029200-71047600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr14:71029400-71034400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr14:71029400-71047400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr14:71029400-71049200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr14:71029600-71034600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
27	chr14:71029600-71048600	Weak transcription	Colonic Mucosa	Colon
28	chr14:71029800-71035200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr14:71029800-71035200	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr14:71029800-71046800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr14:71030000-71034800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr14:71030200-71047000	Weak transcription	HSMM	muscle
33	chr14:71030600-71047200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr14:71030800-71045400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr14:71030800-71045400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr14:71030800-71046600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr14:71030800-71046800	Weak transcription	Osteobl	bone
38	chr14:71030800-71059000	Weak transcription	Right Ventricle	heart
39	chr14:71030800-71061200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr14:71031000-71047000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr14:71031000-71047400	Weak transcription	Brain Angular Gyrus	brain
42	chr14:71031000-71051600	Weak transcription	Psoas Muscle	Psoas
43	chr14:71031000-71059000	Weak transcription	Lung	lung
44	chr14:71031200-71047000	Weak transcription	Left Ventricle	heart
45	chr14:71031200-71051600	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr14:71031200-71052000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr14:71031400-71049400	Weak transcription	HepG2	liver
48	chr14:71031600-71034800	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr14:71031800-71035000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr14:71032000-71034800	Strong transcription	Primary B cells from cord blood	blood

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