Variant report

Variant	rs73282126
Chromosome Location	chr14:70986041-70986042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70983745..70986575-chr14:70987708..70990108,2	MCF-7	breast:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10129782	0.80[ASN][1000 genomes]
rs10131716	0.80[ASN][1000 genomes]
rs10135356	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10143254	0.80[ASN][1000 genomes]
rs10144696	0.80[ASN][1000 genomes]
rs10147143	0.80[ASN][1000 genomes]
rs10483830	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10483832	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10873239	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11158863	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12586299	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12586392	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12586441	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12587666	0.81[ASN][1000 genomes]
rs12587714	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12587866	0.80[ASN][1000 genomes]
rs12588723	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12590117	0.80[ASN][1000 genomes]
rs12590198	0.80[ASN][1000 genomes]
rs12590217	0.80[ASN][1000 genomes]
rs12590401	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12590610	0.87[ASN][1000 genomes]
rs1538403	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17108197	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17108201	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17108246	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17108264	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17108267	0.80[ASN][1000 genomes]
rs17108274	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17108276	0.80[ASN][1000 genomes]
rs17108278	0.80[ASN][1000 genomes]
rs17108280	0.80[ASN][1000 genomes]
rs17113651	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1953803	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1959477	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2332431	0.80[ASN][1000 genomes]
rs2332432	0.89[ASN][1000 genomes]
rs28559756	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28612538	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2877672	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs45523543	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55965222	0.80[ASN][1000 genomes]
rs56155089	0.80[ASN][1000 genomes]
rs56322604	0.80[ASN][1000 genomes]
rs56328037	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56392092	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs56687536	0.80[ASN][1000 genomes]
rs56721095	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56922268	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57032041	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57339942	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57598551	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58069917	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58092588	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58777530	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58919501	0.80[ASN][1000 genomes]
rs59044667	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59115232	0.80[ASN][1000 genomes]
rs59233924	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59475121	0.80[ASN][1000 genomes]
rs59599422	0.80[ASN][1000 genomes]
rs60120955	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60251828	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60370428	0.80[ASN][1000 genomes]
rs60453577	0.80[ASN][1000 genomes]
rs60555424	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60848570	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60860517	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60862805	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60867605	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs60870618	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61388426	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66572616	0.90[ASN][1000 genomes]
rs7141713	0.80[ASN][1000 genomes]
rs7141730	0.80[ASN][1000 genomes]
rs7145530	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7150354	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7154904	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7155088	0.80[ASN][1000 genomes]
rs7155436	0.80[ASN][1000 genomes]
rs7157073	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7157455	0.80[ASN][1000 genomes]
rs7157618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7158201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73282127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282153	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73283917	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7359112	0.80[ASN][1000 genomes]
rs74062726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74062730	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74062733	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74062743	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74062746	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74062750	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74062769	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8005893	0.80[ASN][1000 genomes]
rs8006487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8010473	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8012025	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016953	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565042	chr14:70951234-71011734	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1050615	chr14:70954149-71013235	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763072	chr14:70954149-71013247	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70958600-70989000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr14:70958800-70993800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr14:70968600-70989400	Weak transcription	Pancreas	Pancrea
4	chr14:70975800-70990000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr14:70978200-70986600	Weak transcription	Liver	Liver
6	chr14:70978800-70988600	Weak transcription	Ovary	ovary
7	chr14:70979200-70986800	Weak transcription	Primary T cells from cord blood	blood
8	chr14:70980000-70989400	Weak transcription	Brain Angular Gyrus	brain
9	chr14:70981000-70989400	Weak transcription	Brain Substantia Nigra	brain
10	chr14:70981000-70989600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr14:70981200-70994400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr14:70982000-71003600	Weak transcription	HSMM	muscle
13	chr14:70982400-71003200	Weak transcription	Psoas Muscle	Psoas
14	chr14:70982800-70989400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr14:70983800-70989400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr14:70984600-70986600	Weak transcription	Fetal Brain Male	brain
17	chr14:70985800-70986800	Weak transcription	Adipose Nuclei	Adipose
18	chr14:70985800-70987000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr14:70985800-70989400	Weak transcription	Left Ventricle	heart
20	chr14:70985800-71003800	Weak transcription	HSMMtube	muscle
21	chr14:70986000-70986800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
22	chr14:70986000-70987200	Strong transcription	Aorta	Aorta
23	chr14:70986000-70991800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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