Variant report

Variant	rs12589512
Chromosome Location	chr14:71100831-71100832
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71095245..71096945-chr14:71099614..71102087,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10129782	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs10131716	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs10144289	0.80[CHB][hapmap]
rs10147143	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs10483830	0.90[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs10483832	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs11158867	0.80[CHB][hapmap]
rs12586299	0.89[ASN][1000 genomes]
rs12586392	0.93[ASN][1000 genomes]
rs12587866	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs12590117	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs12590198	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs12590217	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs12590401	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs12590471	0.80[CHB][hapmap]
rs12590610	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1538403	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs17108246	0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs17108264	0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs17108274	0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs17108280	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs17113651	0.90[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1953795	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1962311	0.85[CHB][hapmap]
rs2153114	0.81[CHB][hapmap]
rs2332431	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2332432	0.84[ASN][1000 genomes]
rs28710847	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs45523543	0.84[ASN][1000 genomes]
rs56328037	0.83[ASN][1000 genomes]
rs56922268	0.84[ASN][1000 genomes]
rs57339942	0.85[ASN][1000 genomes]
rs57598551	0.84[ASN][1000 genomes]
rs58069917	0.83[ASN][1000 genomes]
rs59044667	0.83[ASN][1000 genomes]
rs59233924	0.84[ASN][1000 genomes]
rs60120955	0.84[ASN][1000 genomes]
rs60251828	0.84[ASN][1000 genomes]
rs60401194	0.81[ASN][1000 genomes]
rs61388426	0.83[ASN][1000 genomes]
rs6420902	0.80[CHB][hapmap]
rs66572616	0.85[ASN][1000 genomes]
rs7141056	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs7141713	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs7141730	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs7150354	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs7154858	0.81[CHB][hapmap]
rs7154904	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs7155088	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs7155436	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs7156661	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs7157685	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs7158848	0.80[CHB][hapmap]
rs74062769	0.84[ASN][1000 genomes]
rs8005893	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs8010044	0.80[CHB][hapmap]
rs8016356	0.84[ASN][1000 genomes]
rs8021911	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs9323542	0.81[CHB][hapmap]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71092200-71107600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:71092200-71107600	Weak transcription	HSMM	muscle
3	chr14:71094600-71101200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr14:71094600-71107200	Weak transcription	HSMMtube	muscle
5	chr14:71097000-71101400	Weak transcription	GM12878-XiMat	blood
6	chr14:71097800-71101000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:71098400-71107200	Weak transcription	Thymus	Thymus
8	chr14:71099000-71101000	Weak transcription	Esophagus	oesophagus
9	chr14:71099000-71101800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:71099000-71107000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr14:71100400-71101800	Strong transcription	Primary B cells from cord blood	blood

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