Variant report

Variant	rs58336137
Chromosome Location	chr6:150208261-150208262
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMARCC1	chr6:150208250-150211123	Hela-S3	cervix:	n/a	chr6:150208765-150208774
2	POLR2A	chr6:150208138-150210950	Hela-S3	cervix:	n/a	n/a
3	FOS	chr6:150208176-150208268	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:150182126..150185111-chr6:150208101..150209742,2	K562	blood:
2	chr6:150201367..150203467-chr6:150207974..150210289,2	MCF-7	breast:
3	chr6:150182126..150186554-chr6:150208101..150210542,3	K562	blood:
4	chr6:150183161..150188305-chr6:150206346..150214162,9	MCF-7	breast:
5	chr6:150208190..150211087-chr6:150219720..150221224,2	MCF-7	breast:
6	chr6:150187701..150190612-chr6:150206560..150208609,2	K562	blood:
7	chr6:150182396..150187721-chr6:150207302..150210632,6	MCF-7	breast:
8	chr6:150200712..150203416-chr6:150207860..150210756,3	MCF-7	breast:

No data

Variant related genes	Relation type
RAET1E-AS1	TF binding region
ENSG00000120256	Chromatin interaction
ENSG00000268592	Chromatin interaction
ENSG00000217733	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17079003	1.00[AMR][1000 genomes]
rs55821564	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59313789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60731777	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60838617	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61746769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782110	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782128	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782131	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782139	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150202800-150208600	Weak transcription	HSMMtube	muscle
2	chr6:150205000-150210400	Enhancers	HMEC	breast
3	chr6:150205600-150208400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:150205600-150216000	Weak transcription	Right Atrium	heart
5	chr6:150205800-150208400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:150205800-150210200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:150205800-150216000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:150206000-150208800	Weak transcription	Adipose Nuclei	Adipose
9	chr6:150206000-150216000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:150206600-150211600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:150206800-150208400	Enhancers	Hela-S3	cervix
12	chr6:150207800-150208800	Enhancers	A549	lung
13	chr6:150207800-150210600	Enhancers	NHDF-Ad	bronchial
14	chr6:150208000-150208800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:150208000-150209000	Flanking Active TSS	NHEK	skin
16	chr6:150208000-150210600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:150208000-150210600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:150208000-150210800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:150208000-150211800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:150208200-150208400	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr6:150208200-150208400	Enhancers	Placenta	Placenta
22	chr6:150208200-150210200	Enhancers	Esophagus	oesophagus
23	chr6:150208200-150210400	Enhancers	Fetal Intestine Small	intestine
24	chr6:150208200-150210400	Enhancers	NHLF	lung
25	chr6:150208200-150210400	Enhancers	Osteobl	bone
26	chr6:150208200-150210600	Enhancers	Muscle Satellite Cultured Cells	--
27	chr6:150208200-150210600	Enhancers	Fetal Intestine Large	intestine

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