Variant report

Variant	rs61746769
Chromosome Location	chr6:150212034-150212035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150183161..150188305-chr6:150206346..150214162,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120256	Chromatin interaction
ENSG00000268592	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17079003	1.00[AMR][1000 genomes]
rs55821564	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58336137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59313789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60731777	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60838617	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782110	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782128	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782131	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782139	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150205600-150216000	Weak transcription	Right Atrium	heart
2	chr6:150205800-150216000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:150206000-150216000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:150208400-150212600	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr6:150208400-150212600	Flanking Active TSS	Hela-S3	cervix
6	chr6:150209200-150212200	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr6:150209200-150212800	Enhancers	A549	lung
8	chr6:150209600-150215800	Weak transcription	Adipose Nuclei	Adipose
9	chr6:150209600-150216000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:150209600-150222200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:150210600-150212800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:150211200-150212600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:150211400-150212200	Flanking Active TSS	HMEC	breast
14	chr6:150211400-150212200	Flanking Active TSS	NHEK	skin
15	chr6:150211400-150212400	Flanking Active TSS	HSMMtube	muscle
16	chr6:150211400-150212600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr6:150211400-150212600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:150211600-150212200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:150211600-150212600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:150211600-150212600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:150211600-150212800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:150211600-150212800	Enhancers	NHDF-Ad	bronchial
23	chr6:150211600-150212800	Enhancers	Osteobl	bone
24	chr6:150211800-150212400	Enhancers	Fetal Muscle Leg	muscle
25	chr6:150211800-150212600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:150211800-150212600	Enhancers	Esophagus	oesophagus
27	chr6:150212000-150212200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:150212000-150212800	Enhancers	Muscle Satellite Cultured Cells	--
29	chr6:150212000-150212800	Enhancers	HSMM	muscle
30	chr6:150212000-150213200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:150212000-150216000	Weak transcription	Placenta	Placenta
32	chr6:150212000-150216000	Weak transcription	Lung	lung
33	chr6:150212000-150216000	Weak transcription	Ovary	ovary
34	chr6:150212000-150216000	Weak transcription	Psoas Muscle	Psoas
35	chr6:150212000-150216200	Weak transcription	Fetal Muscle Trunk	muscle

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