Variant report

Variant	rs60838617
Chromosome Location	chr6:150227713-150227714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17079003	1.00[AMR][1000 genomes]
rs55821564	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58336137	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59313789	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60731777	1.00[AMR][1000 genomes]
rs61746769	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782110	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782114	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782139	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150222600-150229800	Weak transcription	Pancreas	Pancrea
2	chr6:150225400-150227800	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr6:150226000-150227800	Enhancers	Lung	lung
4	chr6:150226200-150242000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:150226400-150227800	Enhancers	Right Ventricle	heart
6	chr6:150226600-150228200	Enhancers	Adipose Nuclei	Adipose
7	chr6:150227000-150227800	Enhancers	Spleen	Spleen
8	chr6:150227200-150229800	Weak transcription	Esophagus	oesophagus
9	chr6:150227600-150227800	ZNF genes & repeats	Fetal Intestine Small	intestine
10	chr6:150227600-150228400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links