Variant report

Variant	rs73782139
Chromosome Location	chr6:150231400-150231401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17079003	1.00[AMR][1000 genomes]
rs55821564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58336137	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59313789	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60731777	1.00[AMR][1000 genomes]
rs60838617	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61746769	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782110	1.00[AMR][1000 genomes]
rs73782114	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782128	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782131	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv3422312	chr6:150230961-150234088	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150226200-150242000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:150227800-150243400	Weak transcription	Right Ventricle	heart
3	chr6:150230200-150231600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:150230200-150239000	Weak transcription	Esophagus	oesophagus
5	chr6:150230400-150243600	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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