Variant report

Variant	rs17079003
Chromosome Location	chr6:150221841-150221842
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
RAET1E	TF binding region
ENSG00000216906	TF binding region
ENSG00000268592	Chromatin interaction
ENSG00000223701	Chromatin interaction
ENSG00000120256	Chromatin interaction
ENSG00000164520	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55821564	1.00[AMR][1000 genomes]
rs58336137	1.00[AMR][1000 genomes]
rs59313789	1.00[AMR][1000 genomes]
rs60731777	1.00[AMR][1000 genomes]
rs60838617	1.00[AMR][1000 genomes]
rs61746769	1.00[AMR][1000 genomes]
rs73782110	1.00[AMR][1000 genomes]
rs73782114	1.00[AMR][1000 genomes]
rs73782128	1.00[AMR][1000 genomes]
rs73782131	1.00[AMR][1000 genomes]
rs73782139	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150209600-150222200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:150216000-150222600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:150216600-150225000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:150218600-150222600	Enhancers	HMEC	breast
5	chr6:150218800-150227600	Weak transcription	Fetal Intestine Small	intestine
6	chr6:150219000-150225800	Weak transcription	Right Atrium	heart
7	chr6:150219200-150223000	Enhancers	Esophagus	oesophagus
8	chr6:150219200-150225400	Weak transcription	Psoas Muscle	Psoas
9	chr6:150219200-150226200	Weak transcription	Spleen	Spleen
10	chr6:150219400-150226000	Weak transcription	Lung	lung
11	chr6:150220200-150225400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:150220800-150222800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:150221400-150222000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:150221400-150222200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:150221400-150222400	Flanking Active TSS	NHEK	skin
16	chr6:150221600-150222400	Enhancers	Gastric	stomach
17	chr6:150221800-150222600	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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